PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta003058

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

G2-like

Protein Properties

Length: 299aa MW: 33758 Da PI: 8.2656

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pta#S26634905	PU_unref	Unigene	View CDS
PUT-157a-Pinus_taeda-724	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.1	3.5e-32	19	72	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++Fv+ave+LGG+ekAtPk +l+lm+vkgL+++hvkSHLQ+YR+ Pta003058 19 PRLRWTPQLHQSFVNAVESLGGQEKATPKLVLQLMDVKGLSISHVKSHLQMYRS 72 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.8E-30	15	74	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.146	15	75	IPR017930	Myb domain
TIGRFAMs	TIGR01557	4.6E-23	19	73	IPR006447	Myb domain, plants
SuperFamily	SSF46689	2.15E-14	19	75	IPR009057	Homeodomain-like
Pfam	PF00249	5.2E-8	20	71	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MGSSGRNGAV RQYVRSNVPR LRWTPQLHQS FVNAVESLGG QEKATPKLVL QLMDVKGLSI 60 SHVKSHLQMY RSMKNDENNH ENESRARQAG FRLERSPQNT QCHYKRESHN KPSDFPCKID 120 SSDLHSTIIG TSLSRLSMEP GFNLGLRPSV VLNPRNVSKE SNRLQKPNVD CSRTTPCASF 180 SYCQPENPTD TIFMDKDPCL MFQYSRGDNM NLYRNPFGGF GKRKAEEMDD IVQLSLCLNP 240 KKSSTMSCHT DSSLPRSSIE EDEQRCTAGK TDDNITSMET SNLNCDDQLI KLELRMSIG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-20	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-20	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-20	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-20	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-20	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-20	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-20	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-20	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-20	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-20	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-20	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-20	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14600.1	4e-32	G2-like family protein