PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta002595
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family GATA
Protein Properties Length: 326aa    MW: 35634.8 Da    PI: 6.4047
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S17050436PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-29582551PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA42.68.1e-14228253934
       GATA   9 TplWRrgpdgnktLCnaCGlyyrkkg 34 
                Tp+WR gp g+ktLCnaCG+++++ +
  Pta002595 228 TPQWRLGPLGPKTLCNACGVRFKSGR 253
                ***********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.6E-4221264IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.0E-9227251IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577169.5E-10227277No hitNo description
CDDcd002029.51E-11228276No hitNo description
PfamPF003201.1E-11228253IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MGMDIARNNS SFVGFPGLEC PIEWGEAAKS FDFSSIGDVF RIEDLSEFSN EDIAGPIPSG  60
SLSSLSSPGS SQNMAKHTVC ASFLNEGDFI CPPYEDGIGL EWLSDFVEDS FAATGSSNSG  120
SLADLSKDKI DDNREKKKQN PTDEAIIPEI PPIKETPRSQ RAVPGRARSK RRRSSGAPIR  180
GWSTSEDYAL QNEGGMKIVT GADAINHYQS SAPQQQPKAL HPLSQPATPQ WRLGPLGPKT  240
LCNACGVRFK SGRLFPEYRP AKSPTFIRYI HSNSHKKVLE MRNQETNDLE GLVFDPHLSD  300
SKHQDQGLLK VKIKLAGLDN LSSQSN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.145210.0root| xylem
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.22e-32GATA family protein