PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta002366
Common NameMYB1
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family MYB
Protein Properties Length: 341aa    MW: 38294.3 Da    PI: 4.626
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S16807544PU_refUnigeneView CDS
PUT-157a-Pinus_taeda-6637PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.99.9e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lv+ ++++G g+W+ +++  g+ R++k+c++rw +yl
        Pta002366 14 KGPWTAEEDRKLVNFITLHGHGCWREVPKLAGLLRCGKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding44.14.8e-1470110446
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       ++ E++l++d+++  G++ W++Ia+ ++ gRt++++k++w++
        Pta002366  70 LSESEEKLIIDLHAAIGNR-WSRIAAQLP-GRTDNEIKNYWNT 110
                      5899***************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-23563IPR009057Homeodomain-like
PROSITE profilePS5129423.934965IPR017930Myb domain
SuperFamilySSF466893.48E-2811108IPR009057Homeodomain-like
SMARTSM007172.1E-141363IPR001005SANT/Myb domain
PfamPF002492.0E-151461IPR001005SANT/Myb domain
CDDcd001671.96E-111661No hitNo description
Gene3DG3DSA:1.10.10.607.5E-2464116IPR009057Homeodomain-like
PROSITE profilePS5129418.67166116IPR017930Myb domain
SMARTSM007177.6E-1366114IPR001005SANT/Myb domain
PfamPF002491.2E-1270110IPR001005SANT/Myb domain
CDDcd001671.18E-971110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MGRQPCCDKV GLKKGPWTAE EDRKLVNFIT LHGHGCWREV PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGLL SESEEKLIID LHAAIGNRWS RIAAQLPGRT DNEIKNYWNT RIKKKLRQMG  120
IDPVTHKPLT QMQMQSTPAQ TLLLQENDTE QKQQEQHNEP DPDQNQSSNG TVETLVSRAR  180
EPHDDIEPLQ NFNMEDSNFN MEDSMQLFNV CSPTSGISLS GRTEEVDSDD SDQVSKSFGN  240
GSSTHSQYIG RESSGVKAEC GLSGWDQMAG VLGDPLSEWN VDLESWAAGL DATAASASAW  300
IQQLPDCQWN DFQGDFEICS SKSCPETLQR LGPFLDDDEF X
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-27121165108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110116RIKKKLR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.45690.0needle| root| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ6V0J20.0Q6V0J2_PINTA; Myb-related protein 20
STRINGXP_010032717.12e-80(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.12e-79myb domain protein 20
Publications ? help Back to Top
  1. Patzlaff A, et al.
    Characterisation of Pt MYB1, an R2R3-MYB from pine xylem.
    Plant Mol. Biol., 2003. 53(4): p. 597-608
    [PMID:15010621]