PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta001980

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

G2-like

Protein Properties

Length: 371aa MW: 41147.9 Da PI: 6.9602

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pta#S20497179	PU_unref	Unigene	View CDS
PUT-157a-Pinus_taeda-57782548	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98.3	5.5e-31	4	58	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWtp+LHerFv+av+qLGG+++AtPk +l++m+++ Lt+++vkSHLQk+Rl Pta001980 4 KQRLRWTPDLHERFVNAVTQLGGADRATPKGVLRMMGIQWLTIYQVKSHLQKFRL 58 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.102	1	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.27E-16	3	58	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.5E-30	3	59	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.6E-24	4	59	IPR006447	Myb domain, plants
Pfam	PF00249	2.2E-8	6	56	IPR001005	SANT/Myb domain
Pfam	PF14379	4.4E-21	91	136	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MASKQRLRWT PDLHERFVNA VTQLGGADRA TPKGVLRMMG IQWLTIYQVK SHLQKFRLAR 60 YIPGSMDDGQ NTGRKEAPGI LSNLDARSGL QITDALKMQM EVQTRLHEQL EVQRQLQQRI 120 EAQGKYFQKI LEEHQRIGGV LKDSANSVEC LSIMSGEQSA QDSDVKLDLS AHPTQATSQD 180 GSGPGRACNK LDIILHNNAS DDESKSFSSQ QNPSSNSLSS ALSLPLESTK PAEPALKKLR 240 LEKPSSSEIH ICNQSDQKHI NRFSSDQTAE VKCDPDIGGQ TSVSTGRECQ QGHSGSSVEQ 300 RQLHVPIQDS HLSLNVQRSD SVTNLSSLPE SQPQLDAELP KFLHLHETPS DHTSYGVMKR 360 SDIHRNLHQD S

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MASKQRLRWT PDLHERFVNA VTQLGGADRA TPKGVLRMMG IQWLTIYQVK SHLQKFRLAR  60
YIPGSMDDGQ NTGRKEAPGI LSNLDARSGL QITDALKMQM EVQTRLHEQL EVQRQLQQRI  120
EAQGKYFQKI LEEHQRIGGV LKDSANSVEC LSIMSGEQSA QDSDVKLDLS AHPTQATSQD  180
GSGPGRACNK LDIILHNNAS DDESKSFSSQ QNPSSNSLSS ALSLPLESTK PAEPALKKLR  240
LEKPSSSEIH ICNQSDQKHI NRFSSDQTAE VKCDPDIGGQ TSVSTGRECQ QGHSGSSVEQ  300
RQLHVPIQDS HLSLNVQRSD SVTNLSSLPE SQPQLDAELP KFLHLHETPS DHTSYGVMKR  360
SDIHRNLHQD S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	3e-22	4	61	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-22	4	61	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-22	4	61	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-22	4	61	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.1692	0.0	root\| shoot\| xylem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	B8LMR6	0.0	B8LMR6_PICSI; Uncharacterized protein
STRING	XP_002525238.1	2e-69	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	1e-54	G2-like family protein