PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Pta001803 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
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Family | MYB_related | ||||||||||||
Protein Properties | Length: 390aa MW: 41678.8 Da PI: 8.015 | ||||||||||||
Description | MYB_related family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.4 | 6.9e-13 | 97 | 141 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ + ++lG+g+W+ Iar + +Rt+ q+ s+ qky Pta001803 97 PWTEEEHRMFLLGLQKLGKGDWRGIARNFVITRTPTQVASHAQKY 141 8*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50158 | 9.274 | 3 | 20 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS51294 | 20.294 | 90 | 146 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.04E-17 | 92 | 147 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.7E-19 | 93 | 145 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.2E-11 | 94 | 144 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-11 | 94 | 140 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.27E-9 | 97 | 142 | No hit | No description |
Pfam | PF00249 | 2.2E-11 | 97 | 141 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MTRKCSHCGN NGHNSRTCPN RGGVKLFGVR LTDGPIRKSA SMGNLMMMSN PSSPADPSEP 60 ASAAAAAAAA AASGYLSDGL VEASTSSNSR ERKKGVPWTE EEHRMFLLGL QKLGKGDWRG 120 IARNFVITRT PTQVASHAQK YFIRQSNMTR KKRRSSLFDM TPDPSSTAVS VEDYPKVASI 180 DPICDSSVQN QILPTGHSVC DNSSQNQMLP TGHTSCDSSV QNQMLPTDLN SVFNQGPLVE 240 PNNGAPLSSQ PASDQEFESN YSEKTAEAEN SFSQCAAAMA CGVPMTFPGF MAPLLPFPFP 300 VWPGFRPATT ELPPNSNIFK PRAEIPKAPV NIIDETGISK LSIGDPPGSI EPSGLSLKLL 360 NKPSRQSAFH TNPALNDNGF SSSGNAIHVV |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pta.11689 | 0.0 | embryo| root| shoot| xylem |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A9NV60 | 0.0 | A9NV60_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47390.1 | 1e-70 | MYB_related family protein |