PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta001630
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family C3H
Protein Properties Length: 414aa    MW: 45361.4 Da    PI: 8.1704
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S25085914PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-67082554PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.97.3e-0896116526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 C+++++ G C++G+ Ck+ H+
  Pta001630  96 VCNYWLA-GNCQRGEECKYLHS 116
                7******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.831632IPR000571Zinc finger, CCCH-type
SMARTSM003560.0061731IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-590116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.18391118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-792116IPR000571Zinc finger, CCCH-type
SMARTSM003566.2E-693117IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-596116IPR000571Zinc finger, CCCH-type
SMARTSM003202.5E-6122161IPR001680WD40 repeat
SuperFamilySSF509789.16E-47124411IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.106.2E-45124409IPR015943WD40/YVTN repeat-like-containing domain
PfamPF004005.2E-5126161IPR001680WD40 repeat
PROSITE profilePS5008212.781129170IPR001680WD40 repeat
PROSITE profilePS5029421.726129414IPR017986WD40-repeat-containing domain
PRINTSPR003202.4E-6148162IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780148162IPR019775WD40 repeat, conserved site
SMARTSM0032020200237IPR001680WD40 repeat
SMARTSM003203.6E-5244281IPR001680WD40 repeat
PfamPF004009.2E-4249281IPR001680WD40 repeat
PROSITE profilePS5008212.547251290IPR001680WD40 repeat
PRINTSPR003202.4E-6268282IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780268282IPR019775WD40 repeat, conserved site
SMARTSM003203.6E-4284321IPR001680WD40 repeat
PfamPF004000.0032286320IPR001680WD40 repeat
PRINTSPR003202.4E-6308322IPR020472G-protein beta WD-40 repeat
SMARTSM003202325368IPR001680WD40 repeat
SMARTSM003207.7371408IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
GKTYTRLPRQ VCVFWQEGRC TRESCNFLHV DEPGSVKRGG ATNGFAPKRS YNGSDERDTQ  60
AAGPPGGSRR NISARWGRGR GGIFISDERQ KIRNKVCNYW LAGNCQRGEE CKYLHSFVMG  120
SDVKFLTQLS GHVKAIRGIA FPSDSGKLYS GGQDKKVIVW DCQTGQGRDI PLNDEVGCLM  180
SEGPWIFVGL PNAVKAWNIL TSTELSLVGP RGQVHALAVG NGMLFAGTHD GSILAWKFSP  240
ASNTCEPAAS LVGHTQAVVS LVSGADRLYS GSMDKTIRVW DLGTFQCLQT LRDHTSVVMS  300
LLCWDQFLLS CSLDNTVKVW VATSSGALEV TYTHNEEHGV LALCGMNDEQ AKPVLLCSCN  360
DNTVRLYDLP SFSERGRIFS RNEVRTFQIA PGGLFFTGDA TGELKVWNWA TQKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A2e-221264148323Tako8
6g6n_A2e-221264148323Tako8
6g6n_B2e-221264148323Tako8
6g6n_C2e-221264148323Tako8
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.37990.0root| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006857936.10.0zinc finger CCCH domain-containing protein 17
RefseqXP_011628379.10.0zinc finger CCCH domain-containing protein 17
SwissprotQ0DYP51e-163C3H17_ORYSJ; Zinc finger CCCH domain-containing protein 17
TrEMBLA0A0D6QSM00.0A0A0D6QSM0_ARACU; Uncharacterized protein
STRINGERN194030.0(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.11e-165C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]