PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta001618
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family G2-like
Protein Properties Length: 415aa    MW: 45220.4 Da    PI: 5.917
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S20495241PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-31425PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like103.21.6e-32144198155
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                kprlrWtpeLHerF+eav++L G+ekAtPk +l+lm+v+gLt++hvkSHLQkYR+
  Pta001618 144 KPRLRWTPELHERFIEAVKKLHGAEKATPKGVLKLMNVEGLTIYHVKSHLQKYRI 198
                79****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.484141201IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.8E-31142199IPR009057Homeodomain-like
SuperFamilySSF466897.53E-18142198IPR009057Homeodomain-like
TIGRFAMsTIGR015573.7E-24144199IPR006447Myb domain, plants
PfamPF002492.6E-9146197IPR001005SANT/Myb domain
PfamPF143796.3E-23237284IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MPPSQSAFSQ SLFSGDYMKQ SYGDTLSGDP LQDIFNFPDV ASECSQRNQV AASSGIVGQD  60
HTKPDEWQDW PEQLPSDDDS LVASWTNLLV VDSGEEPGLN TIYPAATLPS TGSVSQLQQD  120
LCAPAGGNQV ASSSTSSGTG TSNKPRLRWT PELHERFIEA VKKLHGAEKA TPKGVLKLMN  180
VEGLTIYHVK SHLQKYRIAK YMPDQREGKT SCSAAGKEDK KRNSSDDLST LDLKAGMQIT  240
EALRLQMEMQ KKLHEQLEVQ RALQLKIEEH GKYLQKMFEE QQKTDSSFKS QSLSAPRSSN  300
PFAAAAPFEQ SSDVEDYGSR SFPAKRIETG QSGDKSVHGT LPAVSARDKS LPIVVVADNN  360
SEVVANTEKT PRRCGSGSIP EAEDGTNSPP AKRMRSNPEN TCMDKLGPLS RGLVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-25144201259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-25144201259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A9e-26144201158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B9e-26144201158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C9e-26144201158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D9e-26144201158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-25144201259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-25144201259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-25144201259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-25144201259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-25144201259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-25144201259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.174370.0root| shoot| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011623361.13e-82protein PHOSPHATE STARVATION RESPONSE 1
TrEMBLB8LKH40.0B8LKH4_PICSI; Uncharacterized protein
STRINGERN060374e-81(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G29000.31e-68G2-like family protein