PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta001610
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family WRKY
Protein Properties Length: 416aa    MW: 46628.8 Da    PI: 7.0423
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S20693595PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-20455PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.13.8e-33225282259
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                +Dgy+WrKYGqK vk+s+fprsYYrCt  +C vkk+vers+edp+vv++tYeg+H+h+
  Pta001610 225 EDGYRWRKYGQKAVKNSPFPRSYYRCTNGKCFVKKRVERSSEDPSVVITTYEGQHTHH 282
                8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-34209284IPR003657WRKY domain
SuperFamilySSF1182904.84E-29216284IPR003657WRKY domain
PROSITE profilePS5081131.135219284IPR003657WRKY domain
SMARTSM007745.3E-39224283IPR003657WRKY domain
PfamPF031063.1E-26225282IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
XSGWTDFYQL SCDARSQDRN LYQTFTSPGA SGFGFNPSAE MSWNLDIHHH RPSQALSRCS  60
ALMDIDSGLG GDFPLISFQE FLQRDEEFHD FGTHVVRPLS QIPEDQQTRH EAPEEAADFL  120
HSGTPMAATE ETRAGGRSGE TSTVPGTPNS SLSSSSSEGH EESSAGIRLG PSKTEQPSED  180
IISTESSKPT EPEAKKQSRP RKKDQKRNRE PRFAFMTKSD IDHLEDGYRW RKYGQKAVKN  240
SPFPRSYYRC TNGKCFVKKR VERSSEDPSV VITTYEGQHT HHSPALLRGS SSGTSDQLTH  300
FGGAADHHRT ASPFNTAQSP SFNIQSLRMA VQVPQRTNYY GMGSLQAHDP IHRGSSTLQH  360
QQQIIRSIQQ QQQQQQHDHS QHQQQHQLIH SQQMQPPSVD QGLLEDIVPP GMRKNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-242172851078Probable WRKY transcription factor 4
2lex_A9e-242172851078Probable WRKY transcription factor 4
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.181920.0root| shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGXP_008798309.11e-52(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.23e-48WRKY DNA-binding protein 57