PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Pta001609 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
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Family | MYB | ||||||||||||
Protein Properties | Length: 416aa MW: 47343.4 Da PI: 6.3959 | ||||||||||||
Description | MYB family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.6 | 2.2e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd ll ++++ +G g+W++ +++ g++R++k+c++rw++yl Pta001609 14 KGAWSAEEDSLLGKYIQTHGEGNWRSLPKKAGLRRCGKSCRLRWLNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.7 | 8.6e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ Tt+E+el+++ +++lG++ W+ Ia +++ gRt++++k++w++ Pta001609 67 RGNITTDEEELIIRMHALLGNR-WSIIAGRVP-GRTDNEIKNYWNTN 111 7999******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.698 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.56E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.1E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-22 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.48E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 23.353 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 5.1E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.6E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-22 | 69 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.61E-10 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 416 aa Download sequence Send to blast |
MGRAPCCTKV GLNKGAWSAE EDSLLGKYIQ THGEGNWRSL PKKAGLRRCG KSCRLRWLNY 60 LRPCIKRGNI TTDEEELIIR MHALLGNRWS IIAGRVPGRT DNEIKNYWNT NLSKKLAVRG 120 IDPKTHKKIT TDGTNRVNGD RFNQRKGEKI YDSPQKPRQP ERNVARAAQS TGVVIPNVHN 180 LKADLKAQYI ARIREFKSSN AISSSSRLNA QIEPKSRELS TEDPIFRCSS ASEKTRETTH 240 PDFMEPHPVA SSDAGKQTND STVYCSSDSA ASCSLIEHFS SEDDHHYLSM EGNSNECYSQ 300 TLAEDYGSLK PSTPHTESEP ICDSRERDND SHVQKHDQFP EYDVFSFFDV RNAENEICCS 360 ADQWVHEQEA EFMQQKDQEM AQLGSWEKQI DDQEKENFES HVNNDVTAMS WEASFW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 6e-23 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pta.18786 | 0.0 | needle| root |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A1U9VW60 | 0.0 | A0A1U9VW60_PINRA; MYB transcription factor MYB2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 6e-66 | myb domain protein 3 |