PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta001597
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family C2H2
Protein Properties Length: 419aa    MW: 47689.1 Da    PI: 5.286
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S20494372PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-49008PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.00014108130323
                ET..TTTEEESSHHHHHHHHHHT CS
    zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                C+   Cgk+F++   L++H  +H
  Pta001597 108 CSyeGCGKTFTDAGALRKHSHVH 130
                77779**************8776 PP
2zf-C2H212.80.00037135159123
                EEET..TTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                ++C+   Cg+ F ++s LkrH   H
  Pta001597 135 HVCHyeGCGRKFLDSSKLKRHFLIH 159
                79*******************8877 PP
3zf-C2H221.85e-07165189123
                EEET..TTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                ++Cp   Cgk Fs   nL+ H+rtH
  Pta001597 165 FTCPheGCGKAFSLDFNLRAHMRTH 189
                89**********************9 PP
4zf-C2H216.82e-05195220123
                EEET..TTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                + Cp   Cgk++ + + Lk Hi++ H
  Pta001597 195 HICPfeECGKRYAHEYKLKAHIKStH 220
                689********************988 PP
5zf-C2H213.60.00021257282123
                EEET..TTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                + Cp   C+k++ + + L+ H+r+ H
  Pta001597 257 FACPyeGCDKCYIHEYKLNLHLRReH 282
                78*********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.0E-13103132IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.552106135IPR007087Zinc finger, C2H2
SuperFamilySSF576671.21E-7106159No hitNo description
SMARTSM003550.001106130IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280108130IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.9E-12133155IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.027135159IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.902135164IPR007087Zinc finger, C2H2
PROSITE patternPS000280137159IPR007087Zinc finger, C2H2
SuperFamilySSF576671.91E-14146198No hitNo description
Gene3DG3DSA:3.30.160.601.9E-19156190IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.09165194IPR007087Zinc finger, C2H2
SMARTSM003552.5E-4165189IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280167189IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.6E-8191221IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.026195220IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.785195225IPR007087Zinc finger, C2H2
PROSITE patternPS000280197220IPR007087Zinc finger, C2H2
SuperFamilySSF576675.88E-5253280No hitNo description
Gene3DG3DSA:3.30.160.601.6E-7254279IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.018257282IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.203257287IPR007087Zinc finger, C2H2
PROSITE patternPS000280259282IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MERRGQEVMS SNLGIPFENS RAMEALEQQH PYPNPQEHEE QAGQNKPKST KSAGVKWIKE  60
WVPQETVLNN GKCYFLKWVT EDTLKTLKEK QEEKELEPET LPPRVFLCSY EGCGKTFTDA  120
GALRKHSHVH GEKQHVCHYE GCGRKFLDSS KLKRHFLIHT GEKHFTCPHE GCGKAFSLDF  180
NLRAHMRTHS QENYHICPFE ECGKRYAHEY KLKAHIKSTH EKNLANAVKL PPQTEREFSH  240
PKAPTSLYGS VPSDRPFACP YEGCDKCYIH EYKLNLHLRR EHAGYAIEEN GRHGSDSEDE  300
MDQGSDQDGN GRTTGIMTGS GRGRLRVNSK TSSATNLHRK FLNAAAVDLN TKTSSRAVVE  360
SKEPGKGHPR EDSEETEEEE QEDTDNEGWG HGTETDDDDE DDNDDDDDAD EEETEDDMD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C4e-371012221119PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.115170.0needle| root| shoot| xylem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Rapidly induced following seed germination, especially in tender cotyledons. {ECO:0000269|PubMed:26961720}.
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers, to a lower extent in seedlings, stems and leaves, and, at low levels, in roots and senescent leaves. {ECO:0000269|PubMed:26961720}.
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011629428.11e-139uncharacterized zinc finger protein At4g06634 isoform X4
SwissprotQ2V3L31e-108YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLA0A1U7Z1V61e-137A0A1U7Z1V6_NELNU; uncharacterized zinc finger protein At4g06634
STRINGXP_010246046.11e-138(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.11e-102C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]