PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta001527

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

Protein Properties

Length: 429aa MW: 47849.4 Da PI: 10.2325

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pta#S26637710	PU_unref	Unigene	View CDS
PUT-157a-Pinus_taeda-25905	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	43	8.3e-14	166	256	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 f+k +++++v+ +l lp +f++ h+ k ++ +tlede+g+ + + + ++ l++GW++F +++L++gD +vF++++ ++f +v ++r+ Pta001527 166 FLKPMLHPHVSGGFWLGLPTHFCSMHMPK--RDEWMTLEDENGEDSRTLF--LSG--KTGLSAGWRGFSIQHQLEDGDCLVFQMVQPTRF--KVYIVRA 256 899******************999744..5668****9988888..333..345*********************9886777..8888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	7.7E-17	159	257	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.96E-20	160	258	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.44E-21	164	255	No hit	No description
SMART	SM01019	1.9E-16	166	257	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.955	166	257	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.0E-11	166	256	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence Send to blast
XGRGQSRTSL SILLDSANCY FYPLANNEYF LRAAMGPKNS ANAYEEVRKQ RLEENKKRME 60 ELNLVALSNG FSEARNSAHK TTPQRNAKPR TPKVERGPVS VRRSSRVANI PAPDYREAPI 120 DIPYVRRSYG RRSLFSVRCA NPEERQEAID AAARIESELG SAHPTFLKPM LHPHVSGGFW 180 LGLPTHFCSM HMPKRDEWMT LEDENGEDSR TLFLSGKTGL SAGWRGFSIQ HQLEDGDCLV 240 FQMVQPTRFK VYIVRASGFE SAVASEEQAN NTENLQNEAD NPSEELQNEA DDSDRELQEH 300 EASNLGKRKR ALKAGKKASK TTARTGEGQL SKKSGKAKTT VNEKERSSEA KDGKRVLKKS 360 GKVNDENEKH KSKTKGQSSK PNKKTDAGEN AESGSNKKLT KMLPTRKTTR IQNHIKTSGA 420 PSPMVMVQA

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence Send to blast

XGRGQSRTSL SILLDSANCY FYPLANNEYF LRAAMGPKNS ANAYEEVRKQ RLEENKKRME  60
ELNLVALSNG FSEARNSAHK TTPQRNAKPR TPKVERGPVS VRRSSRVANI PAPDYREAPI  120
DIPYVRRSYG RRSLFSVRCA NPEERQEAID AAARIESELG SAHPTFLKPM LHPHVSGGFW  180
LGLPTHFCSM HMPKRDEWMT LEDENGEDSR TLFLSGKTGL SAGWRGFSIQ HQLEDGDCLV  240
FQMVQPTRFK VYIVRASGFE SAVASEEQAN NTENLQNEAD NPSEELQNEA DDSDRELQEH  300
EASNLGKRKR ALKAGKKASK TTARTGEGQL SKKSGKAKTT VNEKERSSEA KDGKRVLKKS  360
GKVNDENEKH KSKTKGQSSK PNKKTDAGEN AESGSNKKLT KMLPTRKTTR IQNHIKTSGA  420
PSPMVMVQA

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.6054	0.0	root\| shoot\| xylem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002313112.2	3e-76	B3 domain-containing protein At3g19184
Swissprot	Q69V36	7e-66	Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBL	B9HRZ6	7e-75	B9HRZ6_POPTR; Uncharacterized protein
STRING	POPTR_0009s10590.1	1e-75	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	8e-53	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]