PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta001477
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family G2-like
Protein Properties Length: 439aa    MW: 47589.2 Da    PI: 5.5192
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S25633940PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-97282554PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.94.7e-2864117155
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                k+r++Wt +LH++Fv av+qL G++kA+Pk+i e+m+v+gLt+e+v+SHLQkYRl
  Pta001477  64 KTRIHWTVQLHQQFVAAVNQL-GIDKAVPKRIIEIMGVHGLTRENVASHLQKYRL 117
                68*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.68361120IPR017930Myb domain
SuperFamilySSF466891.2E-1962121IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-2863122IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-2464117IPR006447Myb domain, plants
PfamPF002495.6E-669116IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
FLRAEFGTRP RAEFGTRLRE ESGDSENETS KLVESSESSS KKRKDSQNLD HSSEIIDDIS  60
SLKKTRIHWT VQLHQQFVAA VNQLGIDKAV PKRIIEIMGV HGLTRENVAS HLQKYRLYLK  120
RLSGSIPAPY PVASFQAAEG GKSGGRMHIQ PPAKSGASSP VLTKGLNLGF ATSPNSTGSF  180
GIGGIDQGTL KSLEQYRAYE QKRAANRAQV LGGIGIMPSK QSSVGQLPAE SKGGLQRMAS  240
VDLSLLWKAQ RDQASNQKPA GLNIGDDLAD QSIKKAVKLE NVQLEPFTVQ PTSKHSRAHS  300
MSNVLTDFCN IDPPLTGFQR SGMLKEINEL QPMEGISWEG STSAKGEFRP VEEMSWKGST  360
STGGAGAEVG VDTSVDLFDD FVEEYGITSL SPPPTEMDEQ SFVGADFEGM GEAGNQDPSP  420
IAPDDIADYL FDDFLPRSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-1960123164ARR10-B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.161340.0root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D6R6V81e-107A0A0D6R6V8_ARACU; Two-component response regulator
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01760.13e-28response regulator 14