PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta001442

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

GeBP

Protein Properties

Length: 444aa MW: 49891.8 Da PI: 6.8705

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pta#S24127842	PU_unref	Unigene	View CDS
PUT-157a-Pinus_taeda-34982548	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	68.6	1.3e-21	149	241	3	97
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 + ++w+++De+++L Gl++f +k gk ++++ y+ v++ + +++s++ql +K+rrLK Kf+ v++ + ++ sf++++++ +++l+k++Wg Pta001442 149 APQVWNSKDELTFLNGLLSF-TKGGKGFPKNMSPAYDHVRSMMGIQYSNKQLRDKLRRLKAKFQSLVEN-VEANNYSFKSDDENTMYKLCKQLWG 241 6789**************.677888889***********************************.677888****************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	6.4E-21	151	241	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence Send to blast
MAIPHPPPSG SESDDDSDSI TPPPKTHQQQ QQRKEQQPQK QALPPSPSPS ALISNKTAAT 60 KASAKRPRKE ENDGIPELPS TKKKATTHTA QLSDEVGIPE LPSTKKKATT HTAQLSDEAP 120 AKERKKTQKQ NVAESISPMS SPQKSGKKAP QVWNSKDELT FLNGLLSFTK GGKGFPKNMS 180 PAYDHVRSMM GIQYSNKQLR DKLRRLKAKF QSLVENVEAN NYSFKSDDEN TMYKLCKQLW 240 GGEDESDDGD DEHRPNVETV GKQSMNGTEK KKKKLPVDAE EDNQEKAKYG EDQEEEEEGQ 300 DEPKRNKTVT NASVESRGGD VERITRELYS QIREERDEMM NELKNTVAKI LEESQAKKKA 360 MIEGYFLNTR ADHVHHPYSS LMTGIHSGRP VPLLNRVKAE ALEEKWRKQQ IVEMKAFLGR 420 LDLLQEECEM CLEELGEPTG SGRS

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence Send to blast

MAIPHPPPSG SESDDDSDSI TPPPKTHQQQ QQRKEQQPQK QALPPSPSPS ALISNKTAAT  60
KASAKRPRKE ENDGIPELPS TKKKATTHTA QLSDEVGIPE LPSTKKKATT HTAQLSDEAP  120
AKERKKTQKQ NVAESISPMS SPQKSGKKAP QVWNSKDELT FLNGLLSFTK GGKGFPKNMS  180
PAYDHVRSMM GIQYSNKQLR DKLRRLKAKF QSLVENVEAN NYSFKSDDEN TMYKLCKQLW  240
GGEDESDDGD DEHRPNVETV GKQSMNGTEK KKKKLPVDAE EDNQEKAKYG EDQEEEEEGQ  300
DEPKRNKTVT NASVESRGGD VERITRELYS QIREERDEMM NELKNTVAKI LEESQAKKKA  360
MIEGYFLNTR ADHVHHPYSS LMTGIHSGRP VPLLNRVKAE ALEEKWRKQQ IVEMKAFLGR  420
LDLLQEECEM CLEELGEPTG SGRS

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.13795	0.0	embryo\| needle\| root\| xylem

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04930.2	3e-10	DNA-binding storekeeper protein-related transcriptional regulator