PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta001423

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

bHLH

Protein Properties

Length: 447aa MW: 49090.9 Da PI: 6.6957

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pta#S26633530	PU_unref	Unigene	View CDS
PUT-157a-Pinus_taeda-50792	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.9	1e-09	49	98	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ + rE+ RRdr+N+ f+eL + + ++ +K++Ka+iL +++ +k+L Pta001423 49 RKVQKADREKLRRDRLNEQFAELGSAIDPD----RPKNDKATILGDTIQTLKEL 98 5677889******************997....79***********99998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.122	48	98	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.9E-12	49	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.46E-12	49	113	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.7E-7	49	98	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.93E-8	49	103	No hit	No description
SMART	SM00353	3.7E-7	54	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence Send to blast
XPFFSGNMFP GFHPPSEIHQ PATELHQLHG QPEIRHNRRG DVKDAIAARK VQKADREKLR 60 RDRLNEQFAE LGSAIDPDRP KNDKATILGD TIQTLKELTA EVKRLEKDQT SLAEESRDLA 120 QEKNELREEK ATLKAEIDQL QSQYEQRVRA MFSWTAMDPT MMMGAPPFPY SVPVPHPGST 180 TVPDSHPTPL QGHAQTPLMA SPFVHVPVPP GTIPMHPSFQ TYPFFGNRST DGSNPYLAFP 240 PYSSPINSHT HVERPSPQYP SSVQPLPGYL VQLQQHPGNR PQSTTGTSQS IGATISAQAS 300 GENLESQQEG KLTASDISNS HPINNGPRSS SNHSGSRTDH MDANHIVLQL KTPGSMPEAP 360 HRQSNHSSYA SEEQEQMQNL QEVSSEVRKG KSSPSDDSSV RVGHKLAEKV CARGLSLCHC 420 VHDASSSSHG NEDSVKTESS QSSTGKE

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence Send to blast

XPFFSGNMFP GFHPPSEIHQ PATELHQLHG QPEIRHNRRG DVKDAIAARK VQKADREKLR  60
RDRLNEQFAE LGSAIDPDRP KNDKATILGD TIQTLKELTA EVKRLEKDQT SLAEESRDLA  120
QEKNELREEK ATLKAEIDQL QSQYEQRVRA MFSWTAMDPT MMMGAPPFPY SVPVPHPGST  180
TVPDSHPTPL QGHAQTPLMA SPFVHVPVPP GTIPMHPSFQ TYPFFGNRST DGSNPYLAFP  240
PYSSPINSHT HVERPSPQYP SSVQPLPGYL VQLQQHPGNR PQSTTGTSQS IGATISAQAS  300
GENLESQQEG KLTASDISNS HPINNGPRSS SNHSGSRTDH MDANHIVLQL KTPGSMPEAP  360
HRQSNHSSYA SEEQEQMQNL QEVSSEVRKG KSSPSDDSSV RVGHKLAEKV CARGLSLCHC  420
VHDASSSSHG NEDSVKTESS QSSTGKE

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.15233	0.0	root\| xylem

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19860.1	4e-52	bHLH family protein