PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Pta001316 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
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Family | bHLH | ||||||||||||
Protein Properties | Length: 468aa MW: 51917.7 Da PI: 8.6649 | ||||||||||||
Description | bHLH family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.3 | 1.4e-13 | 308 | 354 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI++Lq Pta001316 308 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAISYIQELQ 354 799***********************66......******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 5.3E-31 | 3 | 119 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.58 | 304 | 353 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.82E-15 | 307 | 358 | No hit | No description |
SuperFamily | SSF47459 | 1.57E-19 | 307 | 373 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.6E-19 | 308 | 369 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.6E-11 | 308 | 354 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-17 | 310 | 359 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 468 aa Download sequence Send to blast |
RPGLQKLQSF FGGGGEEENN FVSGLDNVSD TEMFYLASMY YSFPRGIGVP GQALASGKCI 60 WLNEPSKLPS NLCSRAYLAK TGGIQTLVCL PMEHGVVEVG SVEMIRESKH AIDKVRSSFN 120 ENACDGNRGQ QAVKGSLVVP FPPNPMRVNA VNAKAAPPLK PSHDWKIFGQ ELSKSTEAVV 180 TKVEDRDRHY QPVFRPPYAH AASYVTNEQR IPYSTVNQNG LQPPNWSHIS NGEAGEIYNT 240 RDLIKPSRIL PLGVAGPSLN AVTARPSIME SEEHSDVEAS ERRPVVVEER RPRKRGRKPA 300 NGREEPLNHV EAERQRREKL NQRFYALRAV VPNISKMDKA SLLGDAISYI QELQSKVKDM 360 ETEREKQQQP QPQQAKSNIQ DGRIVDPISD IDVQMTTGEA TVRVSCAKES HPVGRVMLAL 420 QRLQLDVHHA NISAANENIL HTFVIKLGGT QTLTKDQLLE AISGWSPR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 9e-30 | 302 | 364 | 2 | 64 | Transcription factor MYC2 |
5gnj_B | 9e-30 | 302 | 364 | 2 | 64 | Transcription factor MYC2 |
5gnj_E | 9e-30 | 302 | 364 | 2 | 64 | Transcription factor MYC2 |
5gnj_F | 9e-30 | 302 | 364 | 2 | 64 | Transcription factor MYC2 |
5gnj_G | 9e-30 | 302 | 364 | 2 | 64 | Transcription factor MYC2 |
5gnj_I | 9e-30 | 302 | 364 | 2 | 64 | Transcription factor MYC2 |
5gnj_M | 9e-30 | 302 | 364 | 2 | 64 | Transcription factor MYC2 |
5gnj_N | 9e-30 | 302 | 364 | 2 | 64 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 281 | 298 | RRPVVVEERRPRKRGRKP |
2 | 289 | 297 | RRPRKRGRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pta.2935 | 0.0 | shoot| xylem |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B8LLA6 | 0.0 | B8LLA6_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01260.3 | 2e-77 | bHLH family protein |