PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta001308
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family ERF
Protein Properties Length: 469aa    MW: 51815.3 Da    PI: 4.7484
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S25585863PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-57882551PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.4e-1971119355
        AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAaka++a +kk++g
  Pta001308  71 YRGIRQRP-WGKWAAEIRDPRK---GIRVWLGTFNTAEEAAKAYDAEAKKIRG 119
                9*******.**********954...3*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.62E-2170127IPR016177DNA-binding domain
PROSITE profilePS5103223.28870127IPR001471AP2/ERF domain
SMARTSM003804.6E-3670133IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-3070128IPR001471AP2/ERF domain
PfamPF008473.8E-1271119IPR001471AP2/ERF domain
CDDcd000181.61E-3271128No hitNo description
PRINTSPR003673.8E-117182IPR001471AP2/ERF domain
PRINTSPR003673.8E-1193109IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MSESVNKSDS FDEGYKKKNK PSNNIFNSKQ EFSSGGENEA IPPLKDFEIP PLKDFEKSPA  60
KSAGRTKSNL YRGIRQRPWG KWAAEIRDPR KGIRVWLGTF NTAEEAAKAY DAEAKKIRGK  120
KAKLNFADGS CSVKVDSRNK MLRKKVKSCA KNPDLLLALN IKSKVKSSYS PKPDLLKDCY  180
LQKECSLKDA RRSDLSIYGY DDMEYGDSQL INSPAPFQSN SNASAVQSSE HSHASQNSQK  240
SCSCELCSLN YSEVSNFMFP AYGDTPKFEP VESSYPVGYF DSDHSSNSFD EEHFSWAHEM  300
KTPEISCVYN DDGHESVFVD IKPPVHGVVK DRPVDTSINV NSGTESFGVD TSMEVNDGTE  360
SFGVDTSMEV NDGTECFAVD IPVEVNGGTG CYKTEDNILQ LELSENLFAL EKYLGLSEGD  420
AAGSFPDEEW SLKPWFFDDV PILALPHQSS PGDPGTSGSV YQSSAGFCF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2171126359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.156220.0root
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.14e-24ERF family protein