PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta001074
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family MYB
Protein Properties Length: 534aa    MW: 59215.5 Da    PI: 5.9198
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S31823506PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-2582555PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.11.7e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+lv+ ++++G g+W+++++  g+ R++k+c++rw +yl
        Pta001074 14 KGLWSPEEDEKLVRHITKYGHGCWSAVPKQAGLQRCGKSCRLRWINYL 61
                     678*******************************************97 PP
2Myb_DNA-binding45.81.4e-1467110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg ++++E+ l+v+++  lG++ W+ Ia +++ gRt++++k+ w++
        Pta001074  67 RGTFSPQEENLIVELHSVLGNR-WSQIATHLP-GRTDNEIKNLWNS 110
                      899*******************.*********.*********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-27664IPR009057Homeodomain-like
PROSITE profilePS5129418.531961IPR017930Myb domain
SuperFamilySSF466892.28E-2912108IPR009057Homeodomain-like
SMARTSM007172.5E-131363IPR001005SANT/Myb domain
PfamPF002493.6E-151461IPR001005SANT/Myb domain
CDDcd001676.24E-121761No hitNo description
PROSITE profilePS5129425.1462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2465116IPR009057Homeodomain-like
SMARTSM007171.1E-1266114IPR001005SANT/Myb domain
PfamPF002493.0E-1367110IPR001005SANT/Myb domain
CDDcd001672.86E-969109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MGRHSCCYKQ KLRKGLWSPE EDEKLVRHIT KYGHGCWSAV PKQAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SPQEENLIVE LHSVLGNRWS QIATHLPGRT DNEIKNLWNS CIKKKLRQRG  120
IDPNTHRPLS EVNAEAGDSK NDNSNKKVET QAAMDESHVS AGNEFKHLNA IPRADTANPK  180
FFHVPVEDNT LIASDSQAML QNGFINSNST TTTTTATSTA SAANFSLPKE FFLERFNSVN  240
ATPTSVEAGF NFINQTTSTQ GFTGERDQKL IDNPVLWVLQ APNRSVGFPT ENLMPWPGQG  300
LAKAVSDAFS DFSSDVCDYN SIMANPSMYR PGPCLSSLLY SERSLDQDLL DNAGTNCMNG  360
SGAAGSAQYW DNTDNNNNNN VRSSSRSSSC NSSTANLEVN NGAAFGHFWG FGERLDATDI  420
TSENERKAPL FLERADQSEY AVKWSEMLPP FSSHTQEETL PIYITTDSKS QDLVSSENIN  480
NPNHAALNSA IFPISWQQLQ NTEYPVLGDR TATMLSTPLS DPDFHRIAAV LDQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28121165108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.85800.0root| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ27IP10.0Q27IP1_PINTA; Myb-related protein 61
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.11e-86myb domain protein 61
Publications ? help Back to Top
  1. Bedon F,Grima-Pettenati J,Mackay J
    Conifer R2R3-MYB transcription factors: sequence analyses and gene expression in wood-forming tissues of white spruce (Picea glauca).
    BMC Plant Biol., 2007. 7: p. 17
    [PMID:17397551]