PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta001040
Organism
Pinus taeda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family bHLH
Protein Properties Length: 552aa    MW: 61669.8 Da    PI: 6.9459
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pta#S20496759PU_unrefUnigeneView CDS
PUT-157a-Pinus_taeda-58094PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.47.1e-15323369455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  A+eY+k+L+
  Pta001040 323 NHVLAERRRREKLNERFIILRTLVPFV-----TKMDKASILGDAIEYVKQLR 369
                7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.1E-21372IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.688319368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-19319386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.81E-15322373No hitNo description
PfamPF000101.9E-12323368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-19323388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.8E-18325374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
XRLPGRALAK RHHVWLSQAN EADSKLFSRA ILAKSARIQT VACIPLADGV LEIGSTDPIR  60
EDIGLIHQVT SLLADHSKPV CSEQSTSNPH SENASRALPQ DQLSMQPPDG IVFEEQNVKA  120
TEYNSDNAHD NAHLPMQVSG LQSEKTVTEF GQNGSEVMQL DMSPEDCSND IGSELQVTGG  180
NSCMQVKHST NAWPDISHGL QSSGTQQYLD QGSDDESGHY SKTVSTILQQ QRPSQWTEST  240
TLQLIHGNVN PQDVTQRCAF SSWTGNSGVL VQKAVNAQWV LKYILFSVPS LHSRDRDESS  300
PKLREGENGC RVRRNGQDDI TVNHVLAERR RREKLNERFI ILRTLVPFVT KMDKASILGD  360
AIEYVKQLRR RIQDLEVRSK QMEAEIKKSA EPRKQLSTTS QEKTARQKSG GTTNNNNNNN  420
VDQELVSSCR NFSDHSDQQQ YKISRFEKRK IRVLERSEPL TIIDDCSTDV QVSIIEHEAL  480
VELQCPWREG LLLDIMQTLS NLLFETHSVQ SSVVNSTFVA KIRAKVKAAS IGEKPTITKV  540
KNAVLECIPS RS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A9e-14322388773Transcription factor MYC2
5gnj_B9e-14322388773Transcription factor MYC2
5gnj_E9e-14322388773Transcription factor MYC2
5gnj_F9e-14322388773Transcription factor MYC2
5gnj_G9e-14322388773Transcription factor MYC2
5gnj_I9e-14322388773Transcription factor MYC2
5gnj_M9e-14322388773Transcription factor MYC2
5gnj_N9e-14322388773Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1327332ERRRRE
2328333RRRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.162820.0root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A167V9480.0A0A167V948_PICAB; Transcription factor bHLH-1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.17e-53bHLH family protein