PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Psi012908

Organism

Picea sitchensis

Taxonomic ID

3332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

HB-other

Protein Properties

Length: 362aa MW: 41390.2 Da PI: 8.075

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Psi#S55421041	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.5	4.7e-18	9	64	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR+ t++q+e+Le+ +++++yp+++++ +L+++lgL+e+qV+ WF rR k+kk Psi012908 9 QKRRLKTPSQVEALENIYAEHKYPTESMKGKLSRELGLSEKQVQRWFRHRRLKDKK 64 589999************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.034	5	65	IPR001356	Homeobox domain
SMART	SM00389	3.1E-17	8	69	IPR001356	Homeobox domain
Pfam	PF00046	1.7E-15	9	64	IPR001356	Homeobox domain
CDD	cd00086	1.54E-16	9	66	No hit	No description
SuperFamily	SSF46689	1.72E-16	9	67	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.1E-18	10	64	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MEDKGFVEQK RRLKTPSQVE ALENIYAEHK YPTESMKGKL SRELGLSEKQ VQRWFRHRRL 60 KDKKGKKEDP DSNEELDAGS GSNLQQQQHV VRTELGRSEK RRLLGISDYP SAVLAAELTD 120 HDMLKRNHRV MEEDPHHAGN VSTSQDTSSL QSRSSYEMDA LRNGNYVEMK GSNSKKRKGQ 180 VMHMGMEHTY PQHFSVATEE QYIARGLKQA GGSNSKQAKN WNRLTAKDGE NHRFVNNHDY 240 PSAVLAAELT DRELLKGNHD IVEDPYVSLS QERSSLQSGS SYEMEARRLP SKSLNSFEIE 300 ARSKRREKEG LHMVVEPLYW QQAVEHQAIS AVKVQLGRLF QEDGPMLGVE FDPLPPDAFG 360 YR

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MEDKGFVEQK RRLKTPSQVE ALENIYAEHK YPTESMKGKL SRELGLSEKQ VQRWFRHRRL  60
KDKKGKKEDP DSNEELDAGS GSNLQQQQHV VRTELGRSEK RRLLGISDYP SAVLAAELTD  120
HDMLKRNHRV MEEDPHHAGN VSTSQDTSSL QSRSSYEMDA LRNGNYVEMK GSNSKKRKGQ  180
VMHMGMEHTY PQHFSVATEE QYIARGLKQA GGSNSKQAKN WNRLTAKDGE NHRFVNNHDY  240
PSAVLAAELT DRELLKGNHD IVEDPYVSLS QERSSLQSGS SYEMEARRLP SKSLNSFEIE  300
ARSKRREKEG LHMVVEPLYW QQAVEHQAIS AVKVQLGRLF QEDGPMLGVE FDPLPPDAFG  360
YR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	D5ABF4	0.0	D5ABF4_PICSI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	9e-22	HB-other family protein