PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Psi012822

Organism

Picea sitchensis

Taxonomic ID

3332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

bHLH

Protein Properties

Length: 268aa MW: 30551.7 Da PI: 9.6059

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Psi#S55421176	PU_unref	Unigene	View CDS
PUT-183a-Picea_sitchensis-12819	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31	4.5e-10	167	215	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +Le ++Y++sLq Psi012822 167 NSHSLAERVRREKISERMKVLQDLVPGC----NKVTGKALVLENIINYVQSLQ 215 58***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.7E-16	161	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.76E-9	162	219	No hit	No description
Gene3D	G3DSA:4.10.280.10	8.8E-16	164	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.294	164	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.1E-7	167	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.3E-10	170	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
XGLYGSSVGE RAVYPETKSI VSEEREDYDA NRLHEHTSGY AENHYVMTDQ NMCVDKPLTY 60 RGKGKGHRAP GNMNKRKTDQ YANGSFMETY VQVSAQKGSV KKSRGDRHKS SQSSSIYNDH 120 EQNSNPKSDV IRGESSELLT NSVKDEPKNK SQKDYIHLRS RRGQATNSHS LAERVRREKI 180 SERMKVLQDL VPGCNKVTGK ALVLENIINY VQSLQSQVEI LSVKLTSVLS RCHFDLQING 240 HPSKEHWSNV RETEDFHGSL MHYKQHKQ

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024174867.1	1e-42	transcription factor bHLH79
Swissprot	Q9SRT2	1e-39	BH062_ARATH; Transcription factor bHLH62
TrEMBL	D5AB25	1e-164	D5AB25_PICSI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59640.1	5e-43	BIG PETAL P

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]