PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi012394
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family WRKY
Protein Properties Length: 353aa    MW: 39050.2 Da    PI: 10.059
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S55420275PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-1682PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.42.2e-31283340359
                -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                D+++WrKYGqK++kgs++pr+YY+C+s  gCp++k+vers ed +++++tYegeHnh+
  Psi012394 283 DEFSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERSLEDASMLIVTYEGEHNHS 340
                99***********************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.6E-19235279IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.808.9E-33269340IPR003657WRKY domain
PROSITE profilePS5081129.654276342IPR003657WRKY domain
SuperFamilySSF1182903.53E-26279340IPR003657WRKY domain
SMARTSM007742.4E-38281341IPR003657WRKY domain
PfamPF031067.4E-27283339IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MDPVNISLSL NIQRDRDVQA MTRAGLESAQ RMVSILSQKH HKHQQEQVQQ DFGLAAEDAL  60
SKLNKVVSLL SRKGHARVRR GPLQTQSTAG SGSEQLFMDG PNFLDLDSPN PHASASIYSS  120
SSSDFALSQC VKQFLPCQSS SSGVLSADTN RHQQLHPQMH YPQLQLQHLS PQADVMFRNG  180
YMKLDNSMSC TPTLSSTKSF ISSLSMDGSI ANDKQLLQYQ SISAAQERIP GVSSKRKCSG  240
KGDDSSKCGS TGRCHCSKRR KLRVKRTIRV PAISSKLADI PPDEFSWRKY GQKPIKGSPH  300
PRGYYKCSSM RGCPARKHVE RSLEDASMLI VTYEGEHNHS RLLSSNSSLI VHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-22269339271WRKY transcription factor 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008805954.14e-89protein WRKY1-like isoform X1
TrEMBLD5ADG50.0D5ADG5_PICSI; Uncharacterized protein
STRINGXP_008805954.12e-88(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.14e-50WRKY DNA-binding protein 74