PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Psi012040

Organism

Picea sitchensis

Taxonomic ID

3332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

WRKY

Protein Properties

Length: 282aa MW: 32403 Da PI: 7.0769

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Psi#S55420013	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.7	2.1e-32	208	266	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk++++prsYYrCt+++C+vkk+ver a+dp++v++tYeg+H+h+ Psi012040 208 LDDGYKWRKYGQKVVKNTHHPRSYYRCTQNNCRVKKRVERLADDPRMVITTYEGRHTHS 266 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.0E-34	194	266	IPR003657	WRKY domain
SuperFamily	SSF118290	4.71E-29	200	266	IPR003657	WRKY domain
PROSITE profile	PS50811	29.344	203	265	IPR003657	WRKY domain
SMART	SM00774	9.8E-38	208	267	IPR003657	WRKY domain
Pfam	PF03106	1.2E-25	209	265	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MPESYGQINP FVSAECMQGY FLTRPQHELV HSMHSFQETF HERNGVPEGE LQPSNFASQS 60 DNSDYCFLRP SQLKLSGNGE YPAFSNRVSQ DQALLINSTE YNDSQRGLIS SPLGHAADQV 120 SFSCTDTISH MDYRTNLPEI SLLRSTDDQS FDSSVQENAK RTEGLKNLSN LWWGASSSCD 180 VKMKKVKVRR KLMEPRFCFQ TMSDVDVLDD GYKWRKYGQK VVKNTHHPRS YYRCTQNNCR 240 VKKRVERLAD DPRMVITTYE GRHTHSPCSD TQSEQHDFLS SL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	4e-27	199	265	8	74	Probable WRKY transcription factor 4
2lex_A	4e-27	199	265	8	74	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017622567.1	3e-56	PREDICTED: probable WRKY transcription factor 13
Swissprot	Q93WY4	2e-55	WRK12_ARATH; Probable WRKY transcription factor 12
TrEMBL	D5AE58	0.0	D5AE58_PICSI; Uncharacterized protein
STRING	POPTR_0007s06930.1	9e-55	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44745.1	3e-52	WRKY family protein

Publications ? help Back to Top
Yu Y, et al. MlWRKY12, a novel Miscanthus transcription factor, participates in pith secondary cell wall formation and promotes flowering. Plant Sci., 2013. 212: p. 1-9 [PMID:24094048] Yang L, et al. PtrWRKY19, a novel WRKY transcription factor, contributes to the regulation of pith secondary wall formation in Populus trichocarpa. Sci Rep, 2016. 6: p. 18643 [PMID:26819184] Li W,Wang H,Yu D Arabidopsis WRKY Transcription Factors WRKY12 and WRKY13 Oppositely Regulate Flowering under Short-Day Conditions. Mol Plant, 2016. 9(11): p. 1492-1503 [PMID:27592586] Han Y, et al. WRKY12 represses GSH1 expression to negatively regulate cadmium tolerance in Arabidopsis. Plant Mol. Biol., 2019. 99(1-2): p. 149-159 [PMID:30617455]