PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Psi011967

Organism

Picea sitchensis

Taxonomic ID

3332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

C2H2

Protein Properties

Length: 331aa MW: 36550.9 Da PI: 7.8831

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Psi#S55421050	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.8	0.00074	267	289	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg +Fs+ +L+ H + H Psi011967 267 ECPRCGARFSSVASLVDHVESfH 289 5*****************98877 PP
2	zf-C2H2	20.2	1.6e-06	303	325	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+Cg+ Fs++ +L++H + H Psi011967 303 VCPKCGRGFSNPVSLVQHVEKdH 325 7*****************99888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51039	6.983	40	92	IPR000058	Zinc finger, AN1-type
SMART	SM00154	0.0042	49	85	IPR000058	Zinc finger, AN1-type
Pfam	PF01428	4.3E-10	52	84	IPR000058	Zinc finger, AN1-type
Gene3D	G3DSA:4.10.1110.10	7.8E-9	52	86	IPR000058	Zinc finger, AN1-type
SuperFamily	SSF118310	1.44E-9	53	84	No hit	No description
Gene3D	G3DSA:4.10.1110.10	1.0E-10	123	179	IPR000058	Zinc finger, AN1-type
SuperFamily	SSF118310	3.92E-9	126	179	No hit	No description
PROSITE profile	PS51039	8.253	131	178	IPR000058	Zinc finger, AN1-type
Pfam	PF01428	5.1E-8	134	174	IPR000058	Zinc finger, AN1-type
SMART	SM00154	1.3	134	175	IPR000058	Zinc finger, AN1-type
PROSITE profile	PS50157	9.099	266	294	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.55	266	289	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	2.48E-6	267	321	No hit	No description
PROSITE pattern	PS00028	0	268	289	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.681	302	330	IPR007087	Zinc finger, C2H2
SMART	SM00355	3.3	302	325	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	304	325	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
XGSIPIPLSI FQGELVENNL RTLYIENLKS KFIWELQNSL IWENIAQSKT AGXVDFLPFD 60 CDRCKQVFCL EHRTYSQHHC PNANEHDVTV LVCPMCAKGV RLVPNEDPNI TWESHVSTDC 120 DPTNYDRVKK KPRCPAPGCK EILTFANKLK CRDCAQEICL KHRFGLDHKC PGPKKVEGNF 180 TFSGIFGKNP KEKAMANARA YSSPSSSTSQ SLRSGLFSAV SNLRASAEVG MTKLSSATND 240 VFNRVKSSAL STQQSQEGNM QPVLAEECPR CGARFSSVAS LVDHVESFHE SGHKGGFQEL 300 PDVCPKCGRG FSNPVSLVQH VEKDHGGTSI H

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	126	132	RVKKKPR

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in environmental stress response. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, dehydration and salt stress. {ECO:0000269\|PubMed:17033811}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017697408.1	1e-109	LOW QUALITY PROTEIN: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like
Swissprot	Q0D5B9	2e-96	SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBL	D5ABE6	0.0	D5ABE6_PICSI; Uncharacterized protein
STRING	XP_008784866.1	1e-108	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41835.1	1e-87	C2H2 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]