PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi011789
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C2H2
Protein Properties Length: 357aa    MW: 40769.3 Da    PI: 5.6411
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S55420705PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.23.6e-07109133123
                EEET..TTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                ++C+   Cgk+Fs+  nL++H++tH
  Psi011789 109 FVCTfeGCGKVFSSEFNLNQHLKTH 133
                89**********************9 PP
2zf-C2H217.21.5e-05140163223
                EET..TTTEEESSHHHHHHHHHHT CS
    zf-C2H2   2 kCp..dCgksFsrksnLkrHirtH 23 
                +Cp   C+k++ + s Lk Hir+H
  Psi011789 140 TCPyeECDKRYAHESKLKAHIRSH 163
                69999******************6 PP
3zf-C2H213.50.00021201226123
                EEET..TTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                ++Cp   C+k +++ + L+ H+r+ H
  Psi011789 201 FSCPyeLCNKFYKHEYKLNLHLRReH 226
                89*********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.5E-86087IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.1386387IPR007087Zinc finger, C2H2
SMARTSM003552.56387IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806587IPR007087Zinc finger, C2H2
SuperFamilySSF576678.37E-1294142No hitNo description
Gene3DG3DSA:3.30.160.601.7E-1795136IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF138948.9E-4109133No hitNo description
PROSITE profilePS5015712.757109138IPR007087Zinc finger, C2H2
SMARTSM003552.2E-5109133IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280111133IPR007087Zinc finger, C2H2
PROSITE profilePS501579.806139168IPR007087Zinc finger, C2H2
SMARTSM003550.083139163IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.39E-5140163No hitNo description
Gene3DG3DSA:3.30.160.608.9E-8140163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280141164IPR007087Zinc finger, C2H2
SuperFamilySSF576674.39E-5196223No hitNo description
Gene3DG3DSA:3.30.160.605.6E-6198224IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.725201227IPR007087Zinc finger, C2H2
SMARTSM003550.81201226IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280203226IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MGIVPPNKKP ARKWVKQWVP QNTSLNNGKC FLPKWVPEDT VKEPEERPQE EQPQPEPEYE  60
VAFLCSAEGC GRIFTEATAM RRHGQTHMKC PDATKLKRNL LTHTGEKQFV CTFEGCGKVF  120
SSEFNLNQHL KTHSKENYRT CPYEECDKRY AHESKLKAHI RSHHEKNWVP DVKSTALVEK  180
ESANPRLLTP IAGAATLDRP FSCPYELCNK FYKHEYKLNL HLRREHAVPA HEENEKQVRT  240
SDVEDEMDEG SEQDENVGKV GIISSSGRGK LRIISKPSPG SSLKRKHSSV APVDLNIKAN  300
PKAPIGRSGL FAKEESEEDS EKTEEDKEDT EDEGWGNRMN IETEDDEDDE ETEDERS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C1e-23651638117PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010930779.13e-90zinc finger transcription factor YY1
TrEMBLD5ACC00.0D5ACC0_PICSI; Uncharacterized protein
STRINGXP_010246046.14e-87(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.12e-70C2H2 family protein