PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Psi011729

Organism

Picea sitchensis

Taxonomic ID

3332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

HB-other

Protein Properties

Length: 372aa MW: 41366.7 Da PI: 6.8355

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-183a-Picea_sitchensis-9514	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	27.7	4.7e-09	55	92	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LA++ gLt +qV++WF N R + Psi011729 55 FEHflHPYPKDADKHMLARQAGLTRSQVSNWFINARVR 92 664459******************************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	11.872	33	96	IPR001356	Homeobox domain
SMART	SM00389	4.5E-8	36	100	IPR001356	Homeobox domain
CDD	cd00086	1.64E-11	36	97	No hit	No description
SuperFamily	SSF46689	1.63E-16	37	102	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.5E-28	39	102	IPR009057	Homeodomain-like
Pfam	PF05920	8.0E-18	53	92	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MAGNGKGETS RLRFVDQQLR QQRALQQLGM IQQPAWRPQR GLPERAVSVL RAWLFEHFLH 60 PYPKDADKHM LARQAGLTRS QVSNWFINAR VRLWKPMVEE IYMEEIKEAE LGHSSAEKDY 120 RKSGDSKEDT KSEEGSENSQ NSEDQKHTKT THLDSNAQDV VCEQQNISVS SGLKSEHSPD 180 MRYGRSQAFS IEGLSNDELF HEVRDEGVTP GKLKKARNGI EGSTYHLSPN MSTAVDFKME 240 GSCQNGKFND ERHSSENYIL VHSGMALADS SGSSGSYQIG CLNRYGQEAF TPKFSGSGGV 300 SLTLGLQHSD GLSLSGTQQR CISSEGRNHG LGSVSHDYCN ISETAAAHAA NAYESINLEN 360 RKRFATHLLQ TL

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MAGNGKGETS RLRFVDQQLR QQRALQQLGM IQQPAWRPQR GLPERAVSVL RAWLFEHFLH  60
PYPKDADKHM LARQAGLTRS QVSNWFINAR VRLWKPMVEE IYMEEIKEAE LGHSSAEKDY  120
RKSGDSKEDT KSEEGSENSQ NSEDQKHTKT THLDSNAQDV VCEQQNISVS SGLKSEHSPD  180
MRYGRSQAFS IEGLSNDELF HEVRDEGVTP GKLKKARNGI EGSTYHLSPN MSTAVDFKME  240
GSCQNGKFND ERHSSENYIL VHSGMALADS SGSSGSYQIG CLNRYGQEAF TPKFSGSGGV  300
SLTLGLQHSD GLSLSGTQQR CISSEGRNHG LGSVSHDYCN ISETAAAHAA NAYESINLEN  360
RKRFATHLLQ TL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	7e-17	42	99	1	58	Homeobox protein Meis1
4xrs_B	7e-17	42	99	1	58	Homeobox protein Meis1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0C9RM18	1e-142	A0A0C9RM18_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_11489_4138 transcribed RNA sequence

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	1e-44	BEL1-like homeodomain 1