PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi011624
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 245aa    MW: 27078.4 Da    PI: 7.0613
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S42993419PU_unrefUnigeneView CDS
gnl|UG|Psi#S55420996PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-13596PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.3e-184796255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                ykGVr+++ +g+Wv+eI++p++   + +++lg+f+t+e+Aa+a++ a  +l+g
  Psi011624 47 TYKGVRRRS-WGKWVSEIKEPKK---KSKVWLGSFDTPEMAARAYDVAEFYLKG 96
               69****887.**********854...6*********************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.9E-124796IPR001471AP2/ERF domain
SuperFamilySSF541716.41E-1947105IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.4E-2847106IPR001471AP2/ERF domain
SMARTSM003803.4E-3147111IPR001471AP2/ERF domain
PROSITE profilePS5103222.47147105IPR001471AP2/ERF domain
CDDcd000186.16E-2848106No hitNo description
PRINTSPR003671.7E-94859IPR001471AP2/ERF domain
PRINTSPR003671.7E-97086IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MVTSSTASGA SSKSASTVKG GVKRIRTQNK AASSSPQERT LKLPYPTYKG VRRRSWGKWV  60
SEIKEPKKKS KVWLGSFDTP EMAARAYDVA EFYLKGKKHA LLNFPEMIDH LSQPISLSPR  120
DIQVAAEEAA VAFYINKQER KSPRNPPVSN KPPSSSHQLF TVISSDFQTT NVELSGQTNT  180
SNSSSICTPT EGVGEFECIV VEEDLFESFN LSANLAEAPL LSPPLLFSIH EEEHNLEEGS  240
LWPDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-1639105672Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.20150.0shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026448877.11e-35ethylene-responsive transcription factor ERF043-like
TrEMBLD5ABJ61e-179D5ABJ6_PICSI; Uncharacterized protein
STRINGXP_006426907.15e-34(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.13e-36ERF family protein