PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi011415
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family B3
Protein Properties Length: 400aa    MW: 44855.2 Da    PI: 10.16
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S41649604PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-16566PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.32.7e-13131220299
                EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                +k +++s+v+   +l lp +f++ h+ k  ++  ++lede+g+  +  +    +  ++ l++GW++F  +++L++gD +vF+l++ ++f  +v ++r+
  Psi011415 131 LKPMLHSHVSGGFWLGLPSHFCSIHMPK--RDEWMILEDENGEDSRTLF--LSG--KTGLSAGWRGFSIEHQLEDGDCLVFQLVQPTRF--KVYIVRA 220
                58999*****************777633..5668********9988888..333..345************************997777..8888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.53E-20123222IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.4E-17123221IPR015300DNA-binding pseudobarrel domain
CDDcd100173.83E-21128219No hitNo description
PROSITE profilePS5086310.8130221IPR003340B3 DNA binding domain
SMARTSM010197.7E-17130221IPR003340B3 DNA binding domain
PfamPF023623.5E-11131220IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MGPKNAYEEV RKQRLEENKK RMEELNLVAL SNSFSETRNS ANKSTPQRNV KPRTPKLERG  60
APVSVRRSSR VANIPPPDYR EAPIDIPHLR KSYGRRSLFS VRCANHEERQ EAIESAAKIE  120
SELGSTHPTI LKPMLHSHVS GGFWLGLPSH FCSIHMPKRD EWMILEDENG EDSRTLFLSG  180
KTGLSAGWRG FSIEHQLEDG DCLVFQLVQP TRFKVYIVRA SGFESAVTSE EQPNNTEDLQ  240
NEADNPAEER PNNTDDLQNE ADNSDRELQE HEASNLGKRK RPLKAGKKAS KTTVETGNGK  300
LSKKSGNLKT TVNEKETSSD AKDGKKVLKK SGKFKDENEK HKSKTKGQSN KLNKKTDAGA  360
NAESENNKKL TNMLQTRKTT RIQNRIKTSG APSPMVMVQA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ69V361e-65Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.17e-53B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]