PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi011370
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 404aa    MW: 43699.5 Da    PI: 7.9882
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S41646692PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-2331476PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.60.00052993391055
                HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                + R +++ +++  L++l+ +      +K + a++L +A+ YIk Lq
  Psi011370 299 KVRKEKLGERITALQQLVSPF-----GKTDTASVLLEAMGYIKFLQ 339
                6677888899999*****998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.477289338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0035293344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-7299347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.03E-6299343No hitNo description
SuperFamilySSF474591.1E-10299349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MEERKSRSLS DQWTKLLDSG TGMPDHGVSV INNAALWDHI RTPLSNVYGM ESSSTTSSVE  60
IKDCWMNSPA ANDVSWTSND VKILPSSQHS RQIAEQNRWI ASSSPFCSSS SCNNNNNNTD  120
NSNNNNNNNN AAGNRDAFCY GDGNAGKLLF RPETFPCGPF TRLLDPSNNL PPDSLELELE  180
GFPASRKVSI PPVQLPGPLK ASATFQSSNV LTFHSNMNKL EMPYTNPSPK PVVVQQQKSG  240
GSPSSSPSTS SSNNNLPKNT VDEGGECTTE QKRNSDQAGL SNTAFKKPRT EVSAGAPMKV  300
RKEKLGERIT ALQQLVSPFG KTDTASVLLE AMGYIKFLQD QVQVLSSPYL KGIPSNQKDG  360
RGDQAKYDLR SRGLCLVPVS CTLHVANNNG ADFWTSGIGS GSKF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.47110.0shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9P2690.0A9P269_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.11e-39bHLH family protein