PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Psi011334 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB | ||||||||
Protein Properties | Length: 381aa MW: 42901.5 Da PI: 6.6377 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.8 | 1.9e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd ll ++++ +G g+W++ +++ g++R++k+c++rw++yl Psi011334 14 KGAWSAEEDSLLGKYIQTHGEGNWRSLPKKAGLRRCGKSCRLRWLNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.8 | 1.7e-15 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T++E+el+++ +++lG++ W+ Ia +++ gRt++++k++w++ Psi011334 67 RGNITADEEELIIRMHALLGNR-WSIIAGRVP-GRTDNEIKNYWNTN 111 7999******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.698 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.6E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.3E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-22 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.49E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 23.646 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 2.4E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.0E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.5E-23 | 69 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.27E-11 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence Send to blast |
MGRAPCCAKV GLNKGAWSAE EDSLLGKYIQ THGEGNWRSL PKKAGLRRCG KSCRLRWLNY 60 LRPCIKRGNI TADEEELIIR MHALLGNRWS IIAGRVPGRT DNEIKNYWNT NLSKKLAVRG 120 IDPKTHKKVT TDSINRASDR FNQRKGGKLY DCSQRSQRLE RNVVRAGQST GLVIPNVHNL 180 KADLKGQYIA EPREIQSSNS IRSSSPINTP IQPKSNDFMQ PQPVVSLDAG KQTDDSTVYC 240 SSDSAASCAL IDHLSSEDDD QYLSLEGNSN ECYSHTVAEE SGTLKSSNPQ THSEAICDSR 300 ERDNGGPVQK HDQFPEYDVF SFFDVRNAEN EICCNDDQWV HEQEMPQLHS WDNQIDDQGK 360 EHFGSHVNND VTAMSWEASF W |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-23 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Psi.12550 | 0.0 | shoot |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A167V914 | 0.0 | A0A167V914_PICAB; Transcription factor MYB32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 4e-66 | myb domain protein 3 |