PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Psi011091 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | Trihelix | ||||||||||||
Protein Properties | Length: 234aa MW: 25309.8 Da PI: 5.4819 | ||||||||||||
Description | Trihelix family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 55.3 | 1.7e-17 | 44 | 134 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf..erspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 +W++ v +L++a+++++ +r+klk+++We+v++++ r+ g ++++qCk+k+e+++kry++++++ ++ ++ + s++p++++l+ Psi011091 44 EWSEGAVTTLLDAYESKWLLRNRAKLKGNDWEDVARHVstRSNGTksVKTQTQCKNKIESMKKRYRAEAATLNGSnSNANASSWPLYTRLD 134 5*************************************99555552267*******************99877765899999******997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 3.8E-20 | 42 | 134 | No hit | No description |
CDD | cd00167 | 0.00682 | 58 | 105 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MGKVDSLEKP LQRPGGSSNN NNNNNANGDV LTLSKTPERV KRDEWSEGAV TTLLDAYESK 60 WLLRNRAKLK GNDWEDVARH VSTRSNGTKS VKTQTQCKNK IESMKKRYRA EAATLNGSNS 120 NANASSWPLY TRLDGLLRCR TAAVAAGDAN PNPSPNAIGN PPPDLALLES PPPPPPPPPP 180 VEERERQAEG QGQRQEQEQE QGQGQKQEEV ELVPVAAAAA AAQESNQADD GSNT |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Psi.7685 | 0.0 | shoot |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003523957.1 | 1e-50 | trihelix transcription factor ASIL2 | ||||
Refseq | XP_028228771.1 | 1e-50 | trihelix transcription factor ASIL2-like | ||||
TrEMBL | A0A0D6R195 | 9e-53 | A0A0D6R195_ARACU; Uncharacterized protein | ||||
STRING | GLYMA04G17330.2 | 4e-50 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54390.1 | 7e-45 | sequence-specific DNA binding transcription factors |