PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Psi010634 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB | ||||||||
Protein Properties | Length: 113aa MW: 12948.8 Da PI: 9.4908 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.1 | 3.1e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv ++ +G g W++ ++ g+ R++k+c++rw +yl Psi010634 14 KGAWTQEEDARLVAHIQAHGEGAWRSLPKAAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 59.9 | 5.5e-19 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++++eEdel+++ + +lG++ W++Iar ++ gRt++++k++w++ Psi010634 67 RGNFSEEEDELIIKFHSRLGNK-WSLIARILP-GRTDNEIKNHWNT 110 89********************.*********.***********95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-23 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.908 | 9 | 61 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.76E-30 | 13 | 108 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.2E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.47E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 23.913 | 62 | 113 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.3E-25 | 65 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.2E-12 | 66 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.3E-17 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.75E-12 | 69 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 113 aa Download sequence Send to blast |
MGRSPCCEKA HTNKGAWTQE EDARLVAHIQ AHGEGAWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF SEEEDELIIK FHSRLGNKWS LIARILPGRT DNEIKNHWNT PSC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-32 | 13 | 110 | 26 | 122 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed at low level. Highly expressed in siliques. Weakly expressed in seedlings, young and mature leaves, cauline leaves, stems, flower buds and roots. {ECO:0000269|PubMed:9839469}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022860897.1 | 2e-68 | myb-related protein 308-like | ||||
Swissprot | Q9SZP1 | 8e-69 | MYB4_ARATH; Transcription repressor MYB4 | ||||
TrEMBL | Q27IP2 | 1e-74 | Q27IP2_PINTA; R2R3-MYB transcription factor MYB14 | ||||
STRING | GSMUA_Achr1P07550_001 | 1e-67 | (Musa acuminata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 3e-71 | myb domain protein 4 |