PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi010571
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 118aa    MW: 13992.9 Da    PI: 10.3832
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S37596250PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.64e-1062108346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqk 46 
                      +W+  E+e l++ v+++G+g+Wk I ++     + Rt+ ++k++w++
        Psi010571  62 KWSVIEEETLKKEVAKYGKGRWKFILEKNRdifEERTEVDLKDKWRN 108
                      8********************************9************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.73455114IPR017930Myb domain
SuperFamilySSF466891.72E-1357111IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.4E-1257112IPR009057Homeodomain-like
SMARTSM007174.0E-659112IPR001005SANT/Myb domain
PfamPF002491.2E-762108IPR001005SANT/Myb domain
CDDcd116607.77E-1562111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MDRNPTAQTY EWDEVDSIDS QEEKSPSASR KIRLPTPATR RFSPLKRPRA AADIACRRKH  60
TKWSVIEEET LKKEVAKYGK GRWKFILEKN RDIFEERTEV DLKDKWRNIA RREGLHAP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028102354.11e-31uncharacterized protein LOC114301595 isoform X2
TrEMBLA0A371HCB51e-32A0A371HCB5_MUCPR; Uncharacterized protein (Fragment)
STRINGXP_008366280.13e-30(Malus domestica)
STRINGXP_010262300.15e-30(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.28e-14MYB_related family protein