PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Psi010494 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 124aa MW: 14291.4 Da PI: 9.2078 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 90.1 | 1.1e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 kri n s rqvtfskRr+g++KKAeELS+LC+a+va+i+fsstgkl++yss Psi010494 9 KRIANASARQVTFSKRRKGLFKKAEELSILCAADVALIVFSSTGKLHDYSS 59 79***********************************************96 PP | |||||||
2 | K-box | 61.7 | 2.8e-21 | 58 | 123 | 33 | 98 |
K-box 33 reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++ R++ G++Le Lsl++LqqLe+qL+ +l+ +R +K+e+++++i+elq k +++ een++L++++ Psi010494 58 SSSRNMHGKELEGLSLNDLQQLEEQLKMGLNCVRLQKDEYMVKEINELQDKGRRITEENTELHRQI 123 567************************************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 28.987 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 6.9E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.60E-32 | 2 | 60 | No hit | No description |
SuperFamily | SSF55455 | 3.53E-27 | 3 | 64 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-25 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.9E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-25 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 9.715 | 37 | 124 | IPR002487 | Transcription factor, K-box |
PRINTS | PR00404 | 1.1E-25 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 4.9E-17 | 59 | 123 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence Send to blast |
MAREKIELKR IANASARQVT FSKRRKGLFK KAEELSILCA ADVALIVFSS TGKLHDYSSS 60 RNMHGKELEG LSLNDLQQLE EQLKMGLNCV RLQKDEYMVK EINELQDKGR RITEENTELH 120 RQIT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 5e-17 | 1 | 60 | 1 | 60 | MEF2C |
5f28_B | 5e-17 | 1 | 60 | 1 | 60 | MEF2C |
5f28_C | 5e-17 | 1 | 60 | 1 | 60 | MEF2C |
5f28_D | 5e-17 | 1 | 60 | 1 | 60 | MEF2C |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Psi.2888 | 0.0 | shoot |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the L1 cell layer of the embryo 2 days after pollination. {ECO:0000269|PubMed:15682279}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in palea and stamen primordia. {ECO:0000269|PubMed:15682279}. | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed with highest levels in shoot tips and axillary buds. Also found in fully developed pedicels and flowers. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. May be required for spikelet (rice flower) development. {ECO:0000269|PubMed:15682279}. | |||||
UniProt | Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014620691.1 | 1e-42 | MADS-box transcription factor NMHC5 isoform X4 | ||||
Refseq | XP_014620692.1 | 9e-43 | MADS-box transcription factor NMHC5 isoform X5 | ||||
Swissprot | Q9FUY6 | 4e-39 | JOIN_SOLLC; MADS-box protein JOINTLESS | ||||
Swissprot | Q9XJ66 | 3e-39 | MAD22_ORYSJ; MADS-box transcription factor 22 | ||||
TrEMBL | A9NTK2 | 2e-84 | A9NTK2_PICSI; Uncharacterized protein | ||||
STRING | XP_010027952.1 | 7e-40 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 5e-38 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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