PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Psi010035 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 151aa MW: 17187.7 Da PI: 10.6812 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.2 | 2.2e-09 | 44 | 86 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT +E+e + a +q G++ +++I ++++ + +q++++++ + Psi010035 44 AWTRQEEENFFIALRQVGKN-FEKITSRVQ-SKNKNQVRHYYYRL 86 6*****************99.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.26E-12 | 37 | 91 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.6E-7 | 40 | 89 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 12.433 | 40 | 91 | IPR017884 | SANT domain |
SMART | SM00717 | 5.0E-6 | 41 | 89 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.93E-6 | 44 | 87 | No hit | No description |
Pfam | PF00249 | 2.4E-7 | 44 | 86 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 151 aa Download sequence Send to blast |
MQADQEAQAH AEAEAGPSGE SLPAENGAAL CPAPGKKPTR QWAAWTRQEE ENFFIALRQV 60 GKNFEKITSR VQSKNKNQVR HYYYRLIKRM NKLLGPGFVV DAKNTKDANA AMLRWWSLLE 120 KHSCSASKLH LKPRRFKTFV TALGHQLLKD R |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers, roots and leaves. {ECO:0000269|PubMed:15047893}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006854485.3 | 8e-69 | TSL-kinase interacting protein 1 isoform X1 | ||||
Refseq | XP_015898496.1 | 7e-69 | TSL-kinase interacting protein 1 isoform X1 | ||||
Refseq | XP_015898497.1 | 7e-69 | TSL-kinase interacting protein 1 isoform X1 | ||||
Refseq | XP_015898498.1 | 5e-69 | TSL-kinase interacting protein 1 isoform X2 | ||||
Refseq | XP_020529268.1 | 6e-69 | TSL-kinase interacting protein 1 isoform X2 | ||||
Refseq | XP_024935419.1 | 7e-69 | TSL-kinase interacting protein 1 isoform X1 | ||||
Swissprot | Q8LJT8 | 6e-66 | TKI1_ARATH; TSL-kinase interacting protein 1 | ||||
TrEMBL | B8LRI7 | 1e-109 | B8LRI7_PICSI; Uncharacterized protein | ||||
STRING | XP_010050972.1 | 2e-67 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G36960.3 | 7e-68 | TSL-kinase interacting protein 1 |