PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi009960
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 155aa    MW: 18077.4 Da    PI: 5.371
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S55420462PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.25.9e-113472545
                     -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     T+eEdel+++  k+ G++ W++Ia +++ gR ++++  +w 
        Psi009960 34 TEEEDELIIRMYKLVGNR-WSLIAGRLP-GRKAEEIERYWK 72
                     9*****************.*********.***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.2E-62977IPR001005SANT/Myb domain
SuperFamilySSF466891.72E-83372IPR009057Homeodomain-like
PROSITE profilePS500907.3173472IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.7E-143472IPR009057Homeodomain-like
CDDcd001672.34E-93473No hitNo description
PfamPF002491.6E-93473IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MDDVFAQRCS RHFTARDQLI SKESRNLGWV CDITEEEDEL IIRMYKLVGN RWSLIAGRLP  60
GRKAEEIERY WKMRSINTAP LKPIPSRITI NPWLQTHIAP EETACSYNTV YTQNLHSEEE  120
EEEGEESRVE DTRKSTDYML VRPVSPVLKA SCRCS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5ACZ11e-112D5ACZ1_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53200.16e-19MYB_related family protein