PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi009540
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family M-type_MADS
Protein Properties Length: 175aa    MW: 19507 Da    PI: 4.4591
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S55420689PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF35.41.3e-111247237
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEE CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevav 37
               ++e++ +r   + kR++gilKK +EL vLC+a++ +
  Psi009540 12 FVEDSKKRDNHYRKRLEGILKKVKELAVLCGADIFL 47
               68999****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.516349IPR002100Transcription factor, MADS-box
SMARTSM004322.4E-9361IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-13453IPR002100Transcription factor, MADS-box
CDDcd001207.46E-14445No hitNo description
PfamPF003194.7E-101347IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MGTGKKKLEI AFVEDSKKRD NHYRKRLEGI LKKVKELAVL CGADIFLYIK YKGKETRYNS  60
QEIGGSAEVS TTPGCEYKGK ETRYNSQEIG GSAEVSTTPG CDEFWVLPNG VLVAQFPQMV  120
DDVNPMVDDV TPIEQTSIAD DLGEKDILDF QELDIFAIDV AVNEFNSTGP FYHPI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5ACD61e-127D5ACD6_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26320.12e-07AGAMOUS-like 33