PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Psi008904 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 201aa MW: 22793.4 Da PI: 5.7117 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.9 | 2.4e-18 | 26 | 74 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y G+r+++ +g+W+AeIrdp+ r+r++lg+f+tae+Aa+a++aa+ +++g Psi008904 26 YIGIRQRP-WGKWAAEIRDPKV---RARVWLGTFDTAEDAARAYDAAAWRIRG 74 89******.**********943...6**********************88887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.1E-32 | 25 | 88 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.8E-13 | 25 | 74 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.354 | 25 | 82 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.68E-21 | 25 | 83 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 8.8E-31 | 25 | 83 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.40E-18 | 26 | 84 | No hit | No description |
PRINTS | PR00367 | 6.4E-11 | 26 | 37 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.4E-11 | 48 | 64 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 201 aa Download sequence Send to blast |
MGFAGSGNRK MSKRRKGGKR NKKYVYIGIR QRPWGKWAAE IRDPKVRARV WLGTFDTAED 60 AARAYDAAAW RIRGKKAKLN FSDVHRSVDT DLNAESGSSV SNLVSDDYTA NAKTHDAVDG 120 MKKMEEETQN VGDHAAASSC MNMWNTGDWM DYSPVEVLAA SVDMDFSLQY DDWAWSSCQE 180 VGVDDLEESY PYSMFHLWMF D |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-21 | 26 | 82 | 6 | 63 | ATERF1 |
3gcc_A | 2e-21 | 26 | 82 | 6 | 63 | ATERF1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | D5ACE8 | 1e-147 | D5ACE8_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G47520.1 | 4e-20 | ERF family protein |