PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Psi006771

Organism

Picea sitchensis

Taxonomic ID

3332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

Trihelix

Protein Properties

Length: 370aa MW: 42163.8 Da PI: 7.0243

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-183a-Picea_sitchensis-25057	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	98.1	7.8e-31	54	139	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k ev+aLi++r+++e ++++ k+plW+e+s m++ gf +rs+k+Ckekwen+nk+++k+k+++kkr +e+ +tcpyf+ql+ Psi006771 54 RWPKPEVQALIRLRSNLEPKFQEPGPKGPLWQEISTGMASLGFtNRSAKRCKEKWENINKYFRKTKDSMKKR-PENAKTCPYFHQLD 139 8****************************************99**********************8.99999*****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	1.2E-4	51	114	IPR001005	SANT/Myb domain
Pfam	PF13837	6.7E-21	53	140	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.2E-4	53	111	IPR009057	Homeodomain-like
CDD	cd12203	8.07E-29	53	119	No hit	No description
PROSITE profile	PS50090	7.352	54	112	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
XHEGEAAIVA FLQKITGQDL KLPEAPVPSH ATETQEDHQI SCMDKDLSDP NGKRWPKPEV 60 QALIRLRSNL EPKFQEPGPK GPLWQEISTG MASLGFTNRS AKRCKEKWEN INKYFRKTKD 120 SMKKRPENAK TCPYFHQLDV LYRKGILSSP NKCNRVDQNS NSSDAMLEDQ GHGHESNHKD 180 DLHEHIQASR SDSEHIISVM PAEAEEITPA NDNDNVYFFR SPDPVDHGHQ MTKLKKILPA 240 NNHKTPNSAS PNVESGTTTR NTGVFSTDNN KTALVMERMA KDMLEAQQQH QKKLLEEFER 300 REQNQNQHLH QHQQHQELRD QEEFRCQQNE LKLIQERSQS ATQSALMALV DKLTAEIAGG 360 YSIPVPSAKR

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

XHEGEAAIVA FLQKITGQDL KLPEAPVPSH ATETQEDHQI SCMDKDLSDP NGKRWPKPEV  60
QALIRLRSNL EPKFQEPGPK GPLWQEISTG MASLGFTNRS AKRCKEKWEN INKYFRKTKD  120
SMKKRPENAK TCPYFHQLDV LYRKGILSSP NKCNRVDQNS NSSDAMLEDQ GHGHESNHKD  180
DLHEHIQASR SDSEHIISVM PAEAEEITPA NDNDNVYFFR SPDPVDHGHQ MTKLKKILPA  240
NNHKTPNSAS PNVESGTTTR NTGVFSTDNN KTALVMERMA KDMLEAQQQH QKKLLEEFER  300
REQNQNQHLH QHQQHQELRD QEEFRCQQNE LKLIQERSQS ATQSALMALV DKLTAEIAGG  360
YSIPVPSAKR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Psi.11997	0.0	shoot

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024532614.1	1e-60	trihelix transcription factor GT-2 isoform X1
Refseq	XP_024532615.1	1e-60	trihelix transcription factor GT-2 isoform X1
Refseq	XP_024532616.1	6e-61	trihelix transcription factor GT-2 isoform X2
TrEMBL	A0A0C9S5C5	2e-73	A0A0C9S5C5_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_12946_2942 transcribed RNA sequence

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	2e-43	Trihelix family protein