PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Psi006453 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | WOX | ||||||||||||
Protein Properties | Length: 477aa MW: 52625.8 Da PI: 7.2108 | ||||||||||||
Description | WOX family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.3 | 8.5e-21 | 130 | 189 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t++q+++Le +++ r+p+ae++e+++++l +++ ++V++WFqN++a+e++ Psi006453 130 TRWNPTPDQIRILEMFYKGgMRTPNAEQIEHITAQLrqygKIEGKNVFYWFQNHKARERQ 189 7*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 117.5 | 6e-38 | 129 | 191 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+Ptp+Qi+iLe+ yk G+rtPn+e+i++ita+L++yGkie+kNVfyWFQN+kaRerqkq Psi006453 129 GTRWNPTPDQIRILEMFYKGGMRTPNAEQIEHITAQLRQYGKIEGKNVFYWFQNHKARERQKQ 191 69***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.252 | 125 | 190 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 6.84E-12 | 126 | 195 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.9E-8 | 127 | 194 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.6E-18 | 130 | 189 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.41E-7 | 130 | 191 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-7 | 131 | 189 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 477 aa Download sequence Send to blast |
MANINSVANM PFTCENGGCN KRFRPLVPKL TLSSSSTAPM ANAVWSTQQS HDPYNQLQQA 60 FCSASSGNSV SVSAAACFLE PKISRLDGKA DENSNQRNQI DRLIKGDQQN MKEEQAESCA 120 VQSQPTASGT RWNPTPDQIR ILEMFYKGGM RTPNAEQIEH ITAQLRQYGK IEGKNVFYWF 180 QNHKARERQK QKRNSSMQQV AATAAKKTPT TIIADNPNEL HKPNSNGTYS LYNLPFTTMS 240 EDSRLMFASS SLLALPCSKG LATSLAQVGV DVRTPATTGA KRDGLEVLKR SSHGPPQVQM 300 NDEGSPSKNS VIWDSINSGG EGIITNLALS QAAADMPVNV NSCKRKNRLW QVMTPNEELG 360 LHTESSSESI CLQTSSDPIN PSEYIDEEDH RELQTLQLFP LRPEGSLKSK GETNMDNSML 420 SLHVNPSSTC PYPFREINKS AESSTQKGAI FEDHKYSKAA EFFPNFSADY SFLNSMT |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Psi.14029 | 0.0 | shoot |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B8LN48 | 0.0 | B8LN48_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46480.1 | 3e-36 | WUSCHEL related homeobox 4 |