PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi006277
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ARR-B
Protein Properties Length: 678aa    MW: 75776.7 Da    PI: 4.7578
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S50823142PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-20287PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like85.93.9e-27404457256
    G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                 +++Wt++LH+rFv+aveqL G ekA+P++ilelm+v++Lt+++++SHLQkYR++
  Psi006277 404 IKVDWTQDLHRRFVQAVEQL-GVEKAVPSRILELMGVNCLTRHNIASHLQKYRSH 457
                5899****************.********************************86 PP
2Response_reg38.85e-14201291109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEE.SSCTT.SEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealell..kekdpDlillD.iempg.mdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                   vl+vd++p+ ++ ++  le  +y +v++++ +e+a+  l  +e+ +++ l+   +  + +dG+++l    e+ +++p i+++ +++ e +l+a+ +G
     Psi006277  20 VLVVDKDPATLHDIKAKLEARRY-RVTTFERSEDAVSALtnPESSFHVALIEqADFGErLDGFDILDA--ENRKNIPTIMMSNTDNTEVMLRAFALG 113
                   89*********************.***************666677****9993444446899998885..44478********************** PP

                   ESEEEESS--HHHHHH CS
  Response_reg  94 akdflsKpfdpeelvk 109
                   a ++l Kp + ++l +
     Psi006277 114 AVEILQKPLSDDKLKN 129
                   ***********99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521724.41E-1716138IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.2E-1816156No hitNo description
SMARTSM004483.6E-618131IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011026.34719135IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.4E-920129IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.22E-1421139No hitNo description
PROSITE profilePS5129417.116400459IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.5E-26401460IPR009057Homeodomain-like
SuperFamilySSF466895.73E-17401460IPR009057Homeodomain-like
TIGRFAMsTIGR015578.3E-26403457IPR006447Myb domain, plants
PfamPF002499.9E-7406455IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MLQVLEDCNL WKKFPKGLHV LVVDKDPATL HDIKAKLEAR RYRVTTFERS EDAVSALTNP  60
ESSFHVALIE QADFGERLDG FDILDAENRK NIPTIMMSNT DNTEVMLRAF ALGAVEILQK  120
PLSDDKLKNV WQHAVRKALA TAIEPTDDSQ NVADEETLWE GEEGGLVIEG NPNLKGDAFV  180
CEKFPAPSTP KQELTDRFYS THENLDESSV SETTHNFKNE IEETRQMEAV EMTPTEDSAS  240
SGLDEVKKEL DISSTESPKP NEREMLXTAS DLNYPCDKME LDSSFDDFCM GMDGDLLSEL  300
DIDSDMFADF SLDDNEGLDI GPYFLDDCEV QEKDLAEEEA LLLAEVSKAE TQTQQLMADL  360
PDTNNSTISS DISVKEELSS EGKKTNGREA SKLTSKTSHG KRKIKVDWTQ DLHRRFVQAV  420
EQLGVEKAVP SRILELMGVN CLTRHNIASH LQKYRSHRKH LLAREAEAAT WNHRRQLYAT  480
TGTRARPWIG QNGNPLIQPR PSIGFPPMAP ASHAPFRPLH VWGHPTVDHS SVHMWQKHSM  540
PAPAPWPSPD GYFWQQTTAC TNPWDHNAPA SGTPLYPQPL MRLPLAPVTG VPHFMPPVYN  600
GEYYKPDNSA IHPVNIDVPA HLKSSSFHPS KEKVDAAINE VLSNPWTPLP LGLKSPSLES  660
VMAELQRQGI RDVPPASA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-15400455257ARR10-B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.42550.0shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLC0PRL20.0C0PRL2_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.12e-74GBF's pro-rich region-interacting factor 1