PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Psi004867 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | Trihelix | ||||||||||||
Protein Properties | Length: 193aa MW: 22317.5 Da PI: 10.0716 | ||||||||||||
Description | Trihelix family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 70.1 | 4.1e-22 | 1 | 69 | 17 | 87 |
trihelix 17 meerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 m+ ++r+++lk+plWe+vs++++e g++r pk+Ckek+en++k+yk+ keg+ +r ++ +++++f+qlea Psi004867 1 MDANFRDASLKGPLWEHVSRRLEELGYHRDPKKCKEKFENIHKYYKRSKEGRVGR--QDGKNYRFFSQLEA 69 68899************************************************97..66678*******85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd12203 | 2.83E-17 | 1 | 49 | No hit | No description |
Pfam | PF13837 | 2.5E-15 | 2 | 70 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MDANFRDASL KGPLWEHVSR RLEELGYHRD PKKCKEKFEN IHKYYKRSKE GRVGRQDGKN 60 YRFFSQLEAL YSNNNSKPPY NSNKTMNDAS TISNGGGRVQ AHEDPMSTRQ DEDNNNLGGN 120 FMVGTTSAGN TDLNSSEGIS FSSDSSEDYD EPRDSNNKKR KRRGTKKLMA FFESLMKQMM 180 EKQEKMQQKK KKX |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 151 | 160 | PRDSNNKKRK |
2 | 157 | 162 | KKRKRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Psi.13785 | 0.0 | shoot |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010250890.1 | 5e-45 | PREDICTED: trihelix transcription factor GTL1 isoform X2 | ||||
TrEMBL | A0A0D6QXM9 | 9e-46 | A0A0D6QXM9_ARACU; Uncharacterized protein | ||||
STRING | XP_010250883.1 | 5e-44 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33240.1 | 1e-32 | GT-2-like 1 |