PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi004766
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 197aa    MW: 22247 Da    PI: 8.874
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S38844565PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-27499PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.13e-203685255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                y+GVr+++ +g+Wv+eIr+p++   +kr++lg+++t+++Aa+a++ a+++l+g
  Psi004766 36 IYRGVRRRR-WGKWVSEIREPRK---KKRIWLGSYDTPQMAARAHDVAALCLKG 85
               69****777.**********843...6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-143585IPR001471AP2/ERF domain
CDDcd000184.35E-323595No hitNo description
PROSITE profilePS5103223.7753693IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.2E-323694IPR001471AP2/ERF domain
SMARTSM003805.5E-353699IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-233694IPR016177DNA-binding domain
PRINTSPR003671.0E-93748IPR001471AP2/ERF domain
PRINTSPR003671.0E-95975IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MAEKRFVPNA NDMGELESKR KKRACGEAEG TGSYPIYRGV RRRRWGKWVS EIREPRKKKR  60
IWLGSYDTPQ MAARAHDVAA LCLKGKAACL NFPDLVNTFP RPSSLDPSDI QSAAAEAARA  120
FNAETFSLQS SSSHGSYADQ NYYNALSESL REKLEPDYAE NSLHEQQATT NSASTPCTEL  180
ELRLNLWWPS KMIQEKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1737971576Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14159RRRWGKWVSEIREPRKKKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.150870.0shoot
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018454728.18e-44PREDICTED: ethylene-responsive transcription factor TINY-like
RefseqXP_018456156.18e-44PREDICTED: ethylene-responsive transcription factor TINY-like
SwissprotQ9LYD35e-42DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A0D6R4W11e-46A0A0D6R4W1_ARACU; Uncharacterized protein
STRINGBra036552.1-P7e-42(Brassica rapa)
STRINGXP_010454922.19e-42(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.13e-24ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]