PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Psi004602 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | C2H2 | ||||||||||||
Protein Properties | Length: 206aa MW: 22959.9 Da PI: 4.236 | ||||||||||||
Description | C2H2 family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.8 | 8.1e-05 | 45 | 70 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 + Cp C+k++ + + L+ H+r+ H Psi004602 45 FACPydGCDKCYIHEYKLNLHLRReH 70 78**********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.41E-5 | 41 | 68 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 8.4E-8 | 42 | 67 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.099 | 45 | 72 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 47 | 70 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
XPHIKSTHEK NLANAVKLPP QNEREFLHPK VPTSVYGSVP SDRPFACPYD GCDKCYIHEY 60 KLNLHLRREH AGYAFEENGR HGSDSEDEMD QGSDQDGNGR NAGIMTGSGR GRLRVTSKTS 120 SATNLHRKFM NAAAVDSNTK TSSRAIVESK EPGKGHPRED SEETEDQEDT DNEGWGHGTE 180 TDDDDEDDND DDDDDADEEE TEDDMD |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011629428.1 | 1e-37 | uncharacterized zinc finger protein At4g06634 isoform X4 | ||||
TrEMBL | B8LR03 | 9e-76 | B8LR03_PICSI; Uncharacterized protein | ||||
STRING | ERM97843 | 1e-37 | (Amborella trichopoda) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G06634.2 | 8e-22 | C2H2 family protein |