PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi004498
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 211aa    MW: 23222.3 Da    PI: 9.9279
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S41651901PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-6300PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2673.6e-213181155
        AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               ++++GVr ++ +gr++AeIrd ++    ++r +lg+f+taeeAa+a+++a+++l+g
  Psi004498 31 THFRGVRKRP-WGRFAAEIRDpWK----KTRLWLGTFDTAEEAARAYDNAARNLRG 81
               589*******.**********883....5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.8E-143181IPR001471AP2/ERF domain
CDDcd000186.97E-303189No hitNo description
PROSITE profilePS5103222.7873289IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-213289IPR016177DNA-binding domain
SMARTSM003802.1E-353295IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-313289IPR001471AP2/ERF domain
PRINTSPR003676.6E-113344IPR001471AP2/ERF domain
PRINTSPR003676.6E-115571IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MAVDTMHMAR IGVKMEIGGG EETASSPVKG THFRGVRKRP WGRFAAEIRD PWKKTRLWLG  60
TFDTAEEAAR AYDNAARNLR GPKAKTNFAF HDDTAALFSN DVTRAVPAQR QEWPPRSAFC  120
SKQEPGVISN IYAPSPALPS VAGNDRASSC VMAVENRAAS AKKQKLLFGI HLFESSRNLQ  180
QQEDAVICSS SRRQPPFLLD LNLPPAANDV D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-202988262ATERF1
3gcc_A1e-202988262ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.61760.0needle
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010278126.12e-40PREDICTED: ethylene-responsive transcription factor 9-like
TrEMBLE0ZGZ01e-155E0ZGZ0_PICSI; Ethylene-responsive element binding factor-like protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.16e-23erf domain protein 9
Publications ? help Back to Top
  1. Holliday JA,Yuen M,Ritland K,Aitken SN
    Postglacial history of a widespread conifer produces inverse clines in selective neutrality tests.
    Mol. Ecol., 2010. 19(18): p. 3857-64
    [PMID:20738783]