PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi004370
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 217aa    MW: 23923.1 Da    PI: 9.3778
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S42988601PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-27111PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.93.8e-213383155
        AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               ++++GVr ++ +gr++AeIrd ++    ++r +lg+f+taeeAa+a+++a+++l+g
  Psi004370 33 THFRGVRKRP-WGRFAAEIRDpWK----KTRLWLGTFDTAEEAARAYDNAARNLRG 83
               589*******.**********883....5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.0E-133383IPR001471AP2/ERF domain
CDDcd000181.21E-303391No hitNo description
PROSITE profilePS5103222.7873491IPR001471AP2/ERF domain
SMARTSM003802.4E-353497IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-313491IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-223492IPR016177DNA-binding domain
PRINTSPR003676.9E-113546IPR001471AP2/ERF domain
PRINTSPR003676.9E-115773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MAVDTMQMAR VGMKMEIGVG DCEETASYAV KGTHFRGVRK RPWGRFAAEI RDPWKKTRLW  60
LGTFDTAEEA ARAYDNAARN LRGPKAKTNF ALQGDSTNSA ILFNNGVTRA INVQRQEWPV  120
FHSKQEPCVS SNSCAAPTAL ASRLDNDRVS SCGASPSLAV ENQTPPTKKQ KLLFGTHLFE  180
SSHISLLRED AVTCRSSRRQ APFLLDLNLP PAANDVD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-213196268ATERF1
3gcc_A1e-213196268ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010278126.14e-39PREDICTED: ethylene-responsive transcription factor 9-like
SwissprotQ9FE673e-34ERF80_ARATH; Ethylene-responsive transcription factor 9
TrEMBLE0ZH201e-102E0ZH20_PICSI; Ethylene-responsive element binding factor-like protein
STRINGXP_010278126.11e-38(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.11e-26erf domain protein 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]
  3. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]