PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi004053
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 232aa    MW: 25847.4 Da    PI: 4.4706
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S37596545PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-19146PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-1975125255
        AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr ++ +g+++AeIrd    + + +r++lg+f++aeeAa a+++a+ +++g
  Psi004053  75 HYRGVRKRP-WGKYAAEIRDS---NrHGARVWLGTFDSAEEAAMAYDQAAFAMRG 125
                8********.**********4...3234*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.76E-3074133No hitNo description
Gene3DG3DSA:3.30.730.101.3E-3174134IPR001471AP2/ERF domain
SMARTSM003803.6E-3875139IPR001471AP2/ERF domain
PfamPF008474.4E-1575125IPR001471AP2/ERF domain
SuperFamilySSF541714.45E-2375135IPR016177DNA-binding domain
PROSITE profilePS5103223.27575133IPR001471AP2/ERF domain
PRINTSPR003676.6E-117687IPR001471AP2/ERF domain
PRINTSPR003676.6E-1199115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MEEPKHVQPY ASLSHEFPFD ENDSEEMVLY GVLQEAMSKG WEPVNQASEE KQEAAAETLA  60
AGEEEKGKSV AVEKHYRGVR KRPWGKYAAE IRDSNRHGAR VWLGTFDSAE EAAMAYDQAA  120
FAMRGSRALL NFPLEVVRES VLRNSKYANL FNYAEVAPGC SQQPSDSKFN DFSISRQEID  180
RGEGDGHPAE KSKSKSNETT EKLVVELGDL GVDLLEDLLL STTGEQPDRN TD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-3174136466ATERF1
3gcc_A3e-3174136466ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLW5RWR72e-69W5RWR7_PINMU; 2-3 ethylene-responsive transcription factor 1B (Fragment)
TrEMBLW5RWS92e-69W5RWS9_PINMU; 2-3 ethylene-responsive transcription factor 1B (Fragment)
TrEMBLW5RYT82e-69W5RYT8_PINSY; 2-3 ethylene-responsive transcription factor 1B (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.12e-28ethylene responsive element binding factor 1