PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Psi003728 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | C2H2 | ||||||||||||
Protein Properties | Length: 250aa MW: 28182.3 Da PI: 8.2813 | ||||||||||||
Description | C2H2 family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.8 | 0.00036 | 101 | 123 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C++ F++ L H rtH Psi003728 101 HECPVCHRNFTSGQALGGHKRTH 123 79*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.17E-6 | 31 | 55 | No hit | No description |
Pfam | PF13912 | 4.1E-8 | 33 | 54 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 98 | 33 | 53 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 8.17E-6 | 96 | 123 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.9E-4 | 99 | 124 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.408 | 101 | 128 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.5E-11 | 101 | 124 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.14 | 101 | 123 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 103 | 123 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
XKKPKRYDVA DADSPYGLEW EDGFKQEMMM RLYACKSCNK KFPSFQALGG HRASCQLKNL 60 PRQLVHNQNN GGFKEAASLY RPSVETYKQS LYTEIKKVRM HECPVCHRNF TSGQALGGHK 120 RTHSTPPATS TNTSTSLSNI EQQHLSAIRS TQELDLNMPA EDENDCIQVQ HSSAVSVNLG 180 GDFLDSTNWP PYDYKLISYK SSQPWWMESH QPGVVKEDEA DSQFRSNTGF VRGRDLGCKR 240 AGLPLITTVN |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Psi.6742 | 0.0 | shoot |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45120.1 | 1e-17 | C2H2-like zinc finger protein |