PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi003540
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C2H2
Protein Properties Length: 261aa    MW: 30119.9 Da    PI: 8.1694
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S41647802PU_refUnigeneView CDS
PUT-183a-Picea_sitchensis-14812PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.2e-05107129223
                EETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                +C+ C+k+F++  +L+ H    H
  Psi003540 107 TCSVCSKVFPTTRLLNLHVAEsH 129
                7*****************98777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003551.879104IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028081104IPR007087Zinc finger, C2H2
SMARTSM003550.23106129IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280108129IPR007087Zinc finger, C2H2
SMARTSM003550.15144169IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280146169IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MDTETEKMEI EMDKNQNESA GDYKFPIWMP FRRKFTPDGP FFAPGNAERE LLAKQATLEL  60
TEDENAQIGV LQYEEFGDLP CPIIGCGARL SAMNDFEDHY LARHTSTCSV CSKVFPTTRL  120
LNLHVAESHD SFFQAKVARG YPMYECLVEG CGMKFNTDRA RHRHLVDKHK FPMSFEFHKR  180
RHPSKRQRQR QRQRLRARHS SNTGETPLDK ENMEVEKNID ALASAVSNLT TEDNTPTVVT  240
FGRRHNRAFG FVPHSLHRKT S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1184189KRQRQR
2187197RQRQRQRLRAR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010453530.11e-101PREDICTED: zinc finger protein 511 isoform X2
TrEMBLA9NZ350.0A9NZ35_PICSI; Uncharacterized protein
STRINGXP_010420037.11e-100(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.12e-94zinc ion binding;nucleic acid binding;zinc ion binding