PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Psi002707

Organism

Picea sitchensis

Taxonomic ID

3332

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

Trihelix

Protein Properties

Length: 321aa MW: 37323.8 Da PI: 7.4474

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Psi#S41648574	PU_unref	Unigene	View CDS
PUT-183a-Picea_sitchensis-1931482	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	78.4	1e-24	68	149	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W +e+++ i++r e+e+++ ++k++k+lWe +s++m+e+gf+rs++qCk+kw+nl +ryk ++++ ++ ++cp+fd+l+ Psi002707 68 QWGFNETKEFIAIRAELEKDFTQTKRNKTLWELISSRMKEKGFRRSSEQCKCKWKNLVNRYKGKETSDPEN----GRQCPFFDELH 149 6999*********************************************************99999974....678****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.922	61	125	IPR017877	Myb-like domain
CDD	cd12203	4.33E-26	67	132	No hit	No description
Pfam	PF13837	2.3E-22	68	151	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MMMGGGGEVE SMGLGMGVMS ALPLLTPTVA ISSGDHLAAS NNSTVVTNNG AGGGGLNSSI 60 KKDDRIPQWG FNETKEFIAI RAELEKDFTQ TKRNKTLWEL ISSRMKEKGF RRSSEQCKCK 120 WKNLVNRYKG KETSDPENGR QCPFFDELHA IFTERAKTMH RLMLESEGGN NQPKKKLKRL 180 KGLQGEKSSD DYSDDEEDEE EDSEDERIVR NKKRKADRER QRVTAEKSRA NSMQEVLQDF 240 FPTATAIENQ WREYAERREQ DRRRLEQDWR QAMENLERER ILMEQVWREK EEQRRAREDG 300 RAEKRDALLT TLLNRLIRED L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ebi_A	1e-11	65	139	3	77	DNA binding protein GT-1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006854232.1	1e-106	trihelix transcription factor GT-3b isoform X2
TrEMBL	A0A0D6R6H2	1e-138	A0A0D6R6H2_ARACU; Uncharacterized protein
STRING	ERN15699	1e-105	(Amborella trichopoda)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38250.1	6e-41	Trihelix family protein