PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi002533
Organism
Picea sitchensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 335aa    MW: 37814.4 Da    PI: 6.8783
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S41647776PU_unrefUnigeneView CDS
PUT-183a-Picea_sitchensis-21988PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.3e-17217267255
        AP2   2 gykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                +++GVr+++ +g+++AeIrd       +  r++lg+f+tae+Aa a+++a+ k++g
  Psi002533 217 HFRGVRRRP-WGKFAAEIRD----SarQGSRVWLGTFDTAEDAAFAYDRAAYKMRG 267
                69*******.**********....33334*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.4E-30216275IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-22217277IPR016177DNA-binding domain
CDDcd000187.22E-28217275No hitNo description
SMARTSM003804.9E-37217281IPR001471AP2/ERF domain
PROSITE profilePS5103223.182217275IPR001471AP2/ERF domain
PfamPF008475.9E-12217267IPR001471AP2/ERF domain
PRINTSPR003674.0E-10218229IPR001471AP2/ERF domain
PRINTSPR003674.0E-10241257IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
DRPKFVRGFI RSLGILLNFS GFHIAEMNVL DQIRQHLLGE SDGSPSFCTG SPAESCLTEN  60
YASSNSWNAS DELDSGFVQS ALVSDFVEEE QTATENQPCG GTRFSRPVLS VTVPRRESFE  120
WERRSVSWGV DSRNFVTACC PASIRRCLSC EWGKLPLDEN DSEDMVLLGV LKEATQKGWT  180
PLTPKEIKNA DVKKQINPRQ ETGHKLSEKE KKSGERHFRG VRRRPWGKFA AEIRDSARQG  240
SRVWLGTFDT AEDAAFAYDR AAYKMRGTKA LLNFPLDVVS KSMDTLREDE SCCRKRKLNE  300
QAVRGEEKRP KSEQCGVDSE ESIVVEDGEQ KRFAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-30216280468ATERF1
3gcc_A3e-30216280468ATERF1
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.54330.0shoot
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026415277.15e-50ethylene-responsive transcription factor 1A-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.12e-35ethylene responsive element binding factor 1